Dr.seq specifications


Unique identifier OMICS_11444
Name Dr.seq
Alternative names Dr.seq2, Drseq
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data The Dr.seq QC and analysis pipeline uses two paired sequencing files as input. One file contains transcript information, and the other contains cell barcode and UMI information.
Input format FASTQ or SAM/BAM
Operating system Unix/Linux, Mac OS
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.1.0
Stability Stable
Requirements R
Maintained Yes



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  • person_outline Yong Zhang <>

Additional information

Manual: http://www.tongji.edu.cn/~zhanglab/drseq2/#Installation Previous version : http://www.tongji.edu.cn/~zhanglab/drseq/

Publications for Dr.seq

Dr.seq institution(s)
Translational Medical Center for Stem Cell Therapy & Institute for Regenerative Medicine, Shanghai East Hospital, School of Life Science and Technology, Shanghai Key Laboratory of Signaling and Disease Research, Tongji University, Shanghai, China
Dr.seq funding source(s)
Supported by National Natural Science Foundation of China (31571365, 31322031 and 31371288), National Key Research and Development Program of China (2016YFA0100400), Specialized Research Fund for the Doctoral Program of Higher Education (20130072110032), and Program of Shanghai Academic Research Leader (17XD1403600).

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