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draw-sneakpeek

Alternative name: DRAW+SneakPeek

Provides analysis workflow and quality metric management for DNA-seq experiments. draw-sneakpeek is a Java pipeline for Next-Generation Sequencing (NGS) data analysis. It was used to process whole-genome sequencing (WGS), whole-exome sequencing (WES) and targeted sequencing experiments on traditional high-performance computing clusters as well as on Amazon elastic compute cloud (EC2). This method is also available as Amazon machine images.

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draw-sneakpeek classification

draw-sneakpeek specifications

Software type:
Pipeline/Workflow
Restrictions to use:
Academic or non-commercial use
Programming languages:
Java
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

draw-sneakpeek distribution

versioning

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No versioning.

draw-sneakpeek support

Maintainers

  • Li-San Wang <>
  • Gerard Schellenberg <>

Credits

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Publications

Institution(s)

Department of Pathology and Laboratory Medicine, Philadelphia, PA, USA; Institute for Biomedical Informatics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA; Department of Physics, University of Washington, Seattle, WA, USA; Genomics and Computational Biology Graduate Group, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA; Department of Pathology and Laboratory Medicine, The Children’s Hospital of Philadelphia, Philadelphia, PA, USA

Funding source(s)

Supported by NIA (U24 AG041689, U01 AG032984, P30 AG010124, P01 AG017586); NIMH (R01 MH089004, R01 MH094382); NINDS (P50 NS053488); CurePSP Foundation.

Link to literature

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