dRep statistics
dRep specifications
Information
Unique identifier | OMICS_16085 |
---|---|
Name | dRep |
Software type | Package/Module |
Interface | Command line interface |
Restrictions to use | None |
Operating system | Unix/Linux |
Programming languages | Python |
Computer skills | Advanced |
Version | 0.3.4 |
Stability | Stable |
Requirements |
Mash, Nucmer, CheckM, Prodigal, gANI, Centrifuge
|
Maintained | Yes |
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Documentation
- Documentation: http://drep.readthedocs.io/en/master/
- Issues: https://github.com/MrOlm/drep/issues
Maintainer
- person_outline Jillian Banfield <>
Publication for dRep
2017 ISME J
PMCID: 5702732
PMID: 28742071
DOI: 10.1038/ismej.2017.126
dRep in publication
library_books
Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles
PMCID: 5893878
PMID: 29636439
DOI: 10.1128/mBio.00441-18
[…] assignments. in order to identify cases in which the same bacterial strain was present in multiple samples, subspecies groups were further analyzed with the anim algorithm () implemented in drep ()., in order to achieve accurate abundance and replication rate measurements from read mapping, databases of representative genomes were created for each sample. each database was constructed […]
dRep funding source(s)
Supported by the Sloan Foundation (grant number: G 2012-10-05), the National Institutes of Health (NIH; award reference number 5R01-AI-092531) and by the National Science Foundation Graduate Research Fellowship under Grant No. DGE 1106400.
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