dRep statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

dRep specifications

Information


Unique identifier OMICS_16085
Name dRep
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.3.4
Stability Stable
Requirements
Mash, Nucmer, CheckM, Prodigal, gANI, Centrifuge
Maintained Yes

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Documentation


Maintainer


  • person_outline Jillian Banfield <>

Publication for dRep

dRep in publication

PMCID: 5893878
PMID: 29636439
DOI: 10.1128/mBio.00441-18

[…] assignments. in order to identify cases in which the same bacterial strain was present in multiple samples, subspecies groups were further analyzed with the anim algorithm () implemented in drep ()., in order to achieve accurate abundance and replication rate measurements from read mapping, databases of representative genomes were created for each sample. each database was constructed […]


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dRep funding source(s)
Supported by the Sloan Foundation (grant number: G 2012-10-05), the National Institutes of Health (NIH; award reference number 5R01-AI-092531) and by the National Science Foundation Graduate Research Fellowship under Grant No. DGE 1106400.

dRep review

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Matt Olm

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