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dRep

Reduces the computational time for pair-wise genome set comparisons by orders of magnitude. dRep sequentially applies an inaccurate estimation of genome distance and a slow but accurate measure of average nucleotide identity. It is easy to use, highly customizable, and parallelizable. The tool can perform rapid pairwise genomic comparisons (without de-replication) to enable visualization of the degree of similarity among groups of similar genomes.

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1 user review

1 user review

Matt Olm's avatar image

Matt Olm

Great

dRep forum

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dRep classification

dRep specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Python
Version:
0.3.4
Requirements:
Mash, Nucmer, CheckM, Prodigal, gANI, Centrifuge
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

dRep distribution

versioning

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No versioning.

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dRep support

Documentation

Maintainer

  • Jillian Banfield <>

Credits

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Publications

Funding source(s)

Supported by the Sloan Foundation (grant number: G 2012-10-05), the National Institutes of Health (NIH; award reference number 5R01-AI-092531) and by the National Science Foundation Graduate Research Fellowship under Grant No. DGE 1106400.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.