dRep statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool dRep
info

Tool usage distribution map

This map represents all the scientific publications referring to dRep per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Whole genome alignment chevron_right
Want to access the full stats & trends on this tool?

Protocols

dRep specifications

Information


Unique identifier OMICS_16085
Name dRep
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.3.4
Stability Stable
Requirements
Mash, Nucmer, CheckM, Prodigal, gANI, Centrifuge
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Jillian Banfield

Publication for dRep

dRep citations

 (2)
library_books

Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles

2018
MBio
PMCID: 5893878
PMID: 29636439
DOI: 10.1128/mBio.00441-18

[…] taxonomic assignments. In order to identify cases in which the same bacterial strain was present in multiple samples, subspecies groups were further analyzed with the ANIm algorithm () implemented in dRep (). […]

call_split

Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome

2018
mSystems
PMCID: 5758725
PMID: 29359195
DOI: 10.1128/mSystems.00123-17
call_split See protocol

[…] was calculated and used to run concoct () with default parameters on all individual assemblies and coassemblies. To remove redundant bins, all bins recovered from each infant were dereplicated using dRep () v0.4.0 with the following command: dRep dereplicate_wf--S_algorithm gANI -comp 50 -con 25 -str 25 -l 50000 -pa 0.9 -nc.1.Using Bowtie2 (), the reads from each sample were mapped to the set of […]


Want to access the full list of citations?
dRep funding source(s)
Supported by the Sloan Foundation (grant number: G 2012-10-05), the National Institutes of Health (NIH; award reference number 5R01-AI-092531) and by the National Science Foundation Graduate Research Fellowship under Grant No. DGE 1106400.

dRep review

star_border star_border star_border star_border star_border
star star star star star
Anonymous user #12680's avatar image No country

Anonymous user #12680

star_border star_border star_border star_border star_border
star star star star star
Desktop
Great