DRIMM-Synteny statistics

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DRIMM-Synteny specifications

Information


Unique identifier OMICS_11707
Name DRIMM-Synteny
Alternative name Duplications and Rearrangements In Multiple Mammals-Synteny
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Son K. Pham <>

Publication for Duplications and Rearrangements In Multiple Mammals-Synteny

DRIMM-Synteny in publications

 (3)
PMCID: 5694560
PMID: 29184557
DOI: 10.3389/fpls.2017.01843

[…] et al., ) genomes. the blastn alignment of 40,267 mapped markers from the wheat consensus snp map published by wang et al. () and agk genes, delivered orthologs between these two resources. using drimm-synteny tool (pham and pevzner, ), we built synteny groups allowing the identification of ancestral regions as well as the ancestral gene content and order between wheat markers along […]

PMCID: 4603330
PMID: 26449933
DOI: 10.1186/1471-2164-16-S10-S8

[…] are many programs designed to find synteny (or syntenic) blocks in the comparison of two or more eukaryotic gene orders, e.g., i-adhore [], dagchainer [], cinteny[], cyntenator [], mcscan [] and drimm-synteny []. these differ in search strategy, flexibility, performance and interpretation. synmap is based on the dagchainer algorithm, and balances sensitivity with rigour in finding blocks. […]

PMCID: 4058928
PMID: 24932010
DOI: 10.1093/bioinformatics/btu259

[…] tools for the identification of syntenic blocks. we illustrate the application of the model and the measures by applying them to syntenic blocks produced by three different contemporary tools (drimm-synteny, i-adhore and cyntenator) on a dataset of eight yeast genomes. our findings highlight the need for a well founded, systematic approach to the decomposition of genomes into syntenic […]


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DRIMM-Synteny institution(s)
Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA
DRIMM-Synteny funding source(s)
The project was financially supported by the Vietnam Education Foundation fellowship.

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