Differential RNA sequencing data analysis bioinformatics software tools

Differential RNA-seq (dRNA-seq) allows the transcriptome-wide mapping of bacterial transcriptional start sites

Source text:
(Sharma et al., 2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature.

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dRNA mapper
Web

dRNA mapper

Detects degradome (d)RNA products derived from input genes. dRNA mapper is part…

Detects degradome (d)RNA products derived from input genes. dRNA mapper is part of SoMART, the Server for plant miRNA/tasiRNA Analysis Resources and Tools. dRNA mapper provides experimental evidence…

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READemption
Desktop

READemption

A pipeline for the computational evaluation of RNA-Seq data.

A pipeline for the computational evaluation of RNA-Seq data.

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RNAseg
Desktop

RNAseg

A tool for the identification of transcriptional units based on dRNA-seq data.

A tool for the identification of transcriptional units based on dRNA-seq data.

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TSSAR
Web

TSSAR

A web service for predicting bacterial transcription start sites from dRNA-seq…

A web service for predicting bacterial transcription start sites from dRNA-seq data.

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TSSer
Desktop

TSSer

A computational method that enables the automatic inference of TSSs from…

A computational method that enables the automatic inference of TSSs from dRNA-seq data.

Curators for dRNA-seq analysis

  • Rekin's Janky's avatar image
    Rekin's Janky
    Laboratory of Computational…
  • Bogdan Mirauta's avatar image
    Bogdan Mirauta
    Laboratory of Computational and…
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