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Differential RNA sequencing data analysis bioinformatics software tools

Differential RNA-seq (dRNA-seq) allows the transcriptome-wide mapping of bacterial transcriptional start sites

Source text:
(Sharma et al., 2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature.

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TSSer
Desktop

TSSer

Enables the automatic inference of transcription start sites (TSSs) from…

Enables the automatic inference of transcription start sites (TSSs) from dRNA-seq data. TSSer allows the discovery of TSSs that may not be expected or easily evaluated such as those of antisense…

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TSSAR
Web

TSSAR

Predicts bacterial transcription start sites (TSSs) from dRNA-seq data. TSSAR…

Predicts bacterial transcription start sites (TSSs) from dRNA-seq data. TSSAR is a tool for automated de novo TSS annotation that respects the statistics of dRNA-seq libraries. It is built on a…

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RNAseg
Desktop

RNAseg

Allows the identification of transcriptional units based on dRNA-seq data.…

Allows the identification of transcriptional units based on dRNA-seq data. RNAseg is an algorithm able to distinguish between transcribed and un-transcribed genomic segments. This tool is used for…

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READemption
Desktop

READemption

Permits the computational evaluation of RNA-Seq data. READemption is an…

Permits the computational evaluation of RNA-Seq data. READemption is an automated RNA-Seq processing with the initial purpose to handle differential RNA-Seq (dRNA-Seq) data for the determination of…

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dRNA mapper
Web

dRNA mapper

Detects degradome (d)RNA products derived from input genes. dRNA mapper is part…

Detects degradome (d)RNA products derived from input genes. dRNA mapper is part of SoMART, the Server for plant miRNA/tasiRNA Analysis Resources and Tools. dRNA mapper provides experimental evidence…

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