DROMPA protocols

DROMPA specifications

Information


Unique identifier OMICS_00438
Name DROMPA
Alternative names DRaw and Observe Multiple enrichment Profiles and Annotation, DROMPA3, DROMPA2
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data A protein-binding profile map.
Output format PNG, PDF
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Version 3.2.6
Stability Stable
Requirements Cairo libraries, GTK library, GNU Scientific Library, zlib, SAMtools (for BAM formatted input), R
Source code URL http://www.iam.u-tokyo.ac.jp/chromosomeinformatics/rnakato/drompa/archives/
Maintained Yes

Versioning


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Documentation


Maintainers


  • person_outline Ryuichiro Nakato <>
  • person_outline Katsuhiko Shirahige <>

Additional information


Testing version of DROMPA3: https://github.com/rnakato/DROMPA3

Publication for DRaw and Observe Multiple enrichment Profiles and Annotation

DROMPA IN pipeline

2015
PMCID: 4626154
PMID: 26503909
DOI: 10.3892/mmr.2015.4249

[…] peaks identified using the refseq database were compared with genomic regions of lncrnas from noncode version 4.0 database (http://www.noncode.org/). images of peak visualization were obtained using drompa 2.3.1 version software (35)., genomic locations of cpg islands were downloaded from ucsc (https://genome.ucsc.edu/) (36). genomic regions of each peak were compared with those of cpg islands […]

DROMPA institution(s)
Research Center for Epigenetic Disease, Institute of Molecular and Cellular Biosciences, The University of Tokyo, Tokyo, Japan; CREST, JST, K’s Gobancho, Tokyo, Japan; School and Graduate School of Bioscience and Biotechnology and Bio-Frontier Research Center, Tokyo Institute of Technology, Yokohama, Japan
DROMPA funding source(s)
Supported by a Grant-in-Aid for Young Scientists, Grant-in-Aid for Scientific Research on Innovative Areas, CREST, a Research Program of Innovative Cell Biology by Innovative Technology and Grant-in-Aid for Scientific Research.

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