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Droplet sequencing data analysis bioinformatics software tools

Drop-seq has recently emerged as a powerful technology to analyze gene expression from thousands of individual cells simultaneously. Currently, Drop-seq technology requires refinement, and quality control (QC) steps are critical for such data…
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Dr.seq
Desktop

Dr.seq

Allows quality control (QC) and analysis components of parallel single cell…

Allows quality control (QC) and analysis components of parallel single cell transcriptome and epigenome data. Dr.seq is a quality control (QC) and analysis pipeline that provides both multifaceted QC…

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Sircel
Desktop

Sircel

Identifies and error-corrects barcodes by traversing the de Bruijn graph of…

Identifies and error-corrects barcodes by traversing the de Bruijn graph of circularized barcode k-mers. Sircel counts k-mers in circularized barcodes extracted from the reads. It assigns reads to…

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Dropbead
Desktop

Dropbead

Allows systematic exploration of Drop-seq data and quantitative assessment of…

Allows systematic exploration of Drop-seq data and quantitative assessment of basic statistics and important parameters. Dropbead is an R package that permits flexible exploration and quantitative…

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