DropEst specifications
Information
| Unique identifier | OMICS_20355 |
|---|---|
| Name | DropEst |
| Software type | Package/Module, Pipeline/Workflow |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | Some files containing pairedend read and index data. |
| Input format | FASTQ |
| Output data | A file containing molecular count matrix and other processed information, as well as a report with diagnostic information on the library. |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | C++, R |
| Computer skills | Advanced |
| Stability | Stable |
| Requirements |
Boost, BamTools, Zlib
|
| Maintained | Yes |
Download
Versioning
No version available
Maintainer
- person_outline Peter Kharchenko
Publication for DropEst
library_books
DropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments
2018 Genome Biol
PMCID: 6010209
PMID: 29921301
DOI: 10.1186/s13059-018-1449-6
DropEst institution(s)
Department of Applied Mathematics, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA; Center for Regenerative Medicine, Massachusetts General Hospital, Boston, MA, USA; Harvard Stem Cell Institute, Cambridge, MA, USA; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA; Harvard Stem Cell Institute, Cambridge, MA, USA
DropEst funding source(s)
Supported by NIH R01HL131768 from NHLBI.
DropEst reviews
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