DropEst specifications


Unique identifier OMICS_20355
Name DropEst
Software type Package/Module, Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some files containing pairedend read and index data.
Input format FASTQ
Output data A file containing molecular count matrix and other processed information, as well as a report with diagnostic information on the library.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
Computer skills Advanced
Stability Stable
Boost, BamTools, Zlib
Maintained Yes




No version available


  • person_outline Peter Kharchenko

Publication for DropEst

DropEst institution(s)
Department of Applied Mathematics, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA; Center for Regenerative Medicine, Massachusetts General Hospital, Boston, MA, USA; Harvard Stem Cell Institute, Cambridge, MA, USA; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA; Harvard Stem Cell Institute, Cambridge, MA, USA
DropEst funding source(s)
Supported by NIH R01HL131768 from NHLBI.

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