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Protocols

DRTF specifications

Information


Unique identifier OMICS_00554
Name DRTF
Alternative name Database of Rice Transcription Factors
Restrictions to use None
Maintained Yes

Taxon


  • Plants and Fungi
    • Oryza sativa

Maintainer


  • person_outline DRTF Team

Publication for Database of Rice Transcription Factors

DRTF citations

 (12)
library_books

Effects of total flavonoids from Drynariae Rhizoma prevent bone loss in vivo and in vitro

2016
PMCID: 5440975
PMID: 28580395
DOI: 10.1016/j.bonr.2016.09.001

[…] MC3T3-E1 cells were treated with DRTF (12.5 μg/ml). After 24 h of incubation, cells were washed with PBS and lysed in RIPA lysis solution. The cell lysates were centrifuged at 10,000 RPM for 10 min at 4 °C. The supernatants were coll […]

library_books

Mulberry Transcription Factor MnDREB4A Confers Tolerance to Multiple Abiotic Stresses in Transgenic Tobacco

2015
PLoS One
PMCID: 4687919
PMID: 26695076
DOI: 10.1371/journal.pone.0145619

[…] for Biotechnology Information (NCBI, http://www.ncbi.nlm.nih.gov/); the Arabidopsis information resource (TAIR, http://www.arabidopsis.org/); EnsemblPlants (http://plants.ensembl.org/index.html); the database of rice transcription factors (DRTF, http://drtf.cbi.pku.edu.cn/index.php) and the plant transcription factor database (Plant TFDB, http://planttfdb.cbi.pku.edu.cn/). The information about th […]

library_books

Genome wide characterization of developmental stage and tissue specific transcription factors in wheat

2015
BMC Genomics
PMCID: 4344791
PMID: 25766308
DOI: 10.1186/s12864-015-1313-y

[…] d wheat [].In 2009, Romeuf et al. constructed the first publicly available wheat TF database, the Database of Wheat Transcription Factors (wDBTF), by BlastX alignment against rice TF sequences in the Database of Rice Transcription Factors (DRTF) []. wDBTF contains 7112 putative wheat TF sequences belonging to 84 subfamilies. In the database, expression data and tissue source information are provid […]

call_split

Overexpression of a NAC transcription factor delays leaf senescence and increases grain nitrogen concentration in wheat

2015
PMCID: 4949518
PMID: 25545326
DOI: 10.1111/plb.12296
call_split See protocol

[…] Protein sequences of all known rice (Oryza sativa ssp. Japonica) NAC genes were downloaded from DRTF (Database of Rice Transcription Factors), while known wheat NAC genes and known senescence‐related NAC genes from other plant species were downloaded from the UniProtKB database. The NAC domain p […]

library_books

Three CCT domain containing genes were identified to regulate heading date by candidate gene based association mapping and transformation in rice

2015
Sci Rep
PMCID: 4286927
PMID: 25563494
DOI: 10.1038/srep07663

[…] of the known GHD7 protein was used to search (using the tBLASTn and BLASTp programs) against the Rice Genome Annotation Project (http://rice.plantbiology.msu.edu/)/NCBI (http://www.ncbi.nlm.nih.gov)/DRTF (http://drtf.cbi.pku.edu.cn/index.php). A total of 41 CCT genes were identified and named sequentially according to their genome positions (). The unrooted phylogenetic tree of CCT family members […]

library_books

Silicon Era of Carbon Based Life: Application of Genomics and Bioinformatics in Crop Stress Research

2013
Int J Mol Sci
PMCID: 3709742
PMID: 23759993
DOI: 10.3390/ijms140611444

[…] One example of applying the above strategy to identify stress-related genes is the analysis of AP2/EREBPs in the rice genome []. “AP2/EREBP” was used as the keyword in searching databases, including DRTF, MSU NCBI, and KOMBE. Any non-redundant sequences obtained were then used as query terms in the TBLAST and BLASTP searches of the MSU and NCBI databases. Four genes with an incomplete AP2 domain […]


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DRTF institution(s)
Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing, China

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