Software tools and databases to predict drug resistance.
Desktop app
Qnr-search Qnr-search

Qnr-search

A method to detect and annotate novel classes of qnr antibiotic resistance…

A method to detect and annotate novel classes of qnr antibiotic resistance genes in nucleotide sequence data. Qnr-search uses a hidden Markov model with a fragment length-dependent classification…

Hepatitis B Virus… Hepatitis B Virus database

HBVdb Hepatitis B Virus database

Allows the researchers to investigate the genetic variability of the virus and…

Allows the researchers to investigate the genetic variability of the virus and the viral resistance to treatment.

Web app
VRprofile VRprofile

VRprofile

Identifies and localizes virulence or antibiotic resistance genes and extended…

Identifies and localizes virulence or antibiotic resistance genes and extended mobilome-related gene clusters as well, in sequenced bacterial genomes. VRprofile is assisted by CDSeasy to quickly…

Web app
geno2pheno-hepatitis-c-virus

g2p-HCV geno2pheno-hepatitis-c-virus

An interpretation system to analyse hepatitis C virus (HCV) sequence data with…

An interpretation system to analyse hepatitis C virus (HCV) sequence data with respect to viral subtype and to predict drug resistance. g2p-HCV aligns the input sequences, identifies the genomic…

MEGARes MEGARes

MEGARes

A hand-curated antimicrobial resistance (AMR) database and annotation…

A hand-curated antimicrobial resistance (AMR) database and annotation structure. MEGARes provides a foundation for the development of high throughput acyclical classifiers and hierarchical…

Desktop app
positionalmi positionalmi

positionalmi

A code for calculation and analysis of positional mutual information.…

A code for calculation and analysis of positional mutual information. positionalmi is an information-theoretic metric to sensitively and robustly detect both local and distant residues that affect…

Antibiotic Resistance… Antibiotic Resistance Genes Online

ARGO Antibiotic Resistance Genes Online

A database for storing genetic information on β-lactam and vancomycin…

A database for storing genetic information on β-lactam and vancomycin resistance genes. ARGO is designed as a resource to enhance research on the prevalence and spread of antibiotic resistance…

Web app
Prediction of Drug… Prediction of Drug Resistant HIV-1

Prediction of Drug Resistant HIV-1

A phenotype prediction webserver that can be used to guide the selection of…

A phenotype prediction webserver that can be used to guide the selection of drugs to treat people with resistant infections. The tool applies the unified sequence/structure encoding and the machine…

Web app
SHIVA SHIVA

SHIVA

A web service for drug resistance prediction of commonly used drugs in…

A web service for drug resistance prediction of commonly used drugs in antiretroviral therapy, i.e., protease inhibitors (PIs), reverse transcriptase inhibitors (NRTIs and NNRTIs), and integrase…

MACE MACE

MACE

Provides interactive tools for a huge amount of chemical response and gene…

Provides interactive tools for a huge amount of chemical response and gene expression data on cancer cell lines. Individual GI50 data of chemicals against NCI60 cell lines were normalized and…

CBMAR CBMAR

CBMAR

beta-Lactam antibiotics are among the most widely used antibiotics against…

beta-Lactam antibiotics are among the most widely used antibiotics against microbial pathogens. CBMAR facilitates comprehensive molecular annotation and discovery of novel beta-lactamases. As against…

The Lahey clinic… The Lahey clinic database

The Lahey clinic database

ß-Lactamase classification and amino acid sequences for TEM, SHV and OXA…

ß-Lactamase classification and amino acid sequences for TEM, SHV and OXA extended-spectrum and inhibitor resistant enzymes. These tables grew out of an attempt to standardize the nomenclature for…

Web app
Biozyne P-gp Predictor Biozyne P-gp Predictor

Biozyne P-gp Predictor

Uses a Support Vector Machine classifier to predict, with high accuracy,…

Uses a Support Vector Machine classifier to predict, with high accuracy, whether a compound is likely to be a substrate of the P-gp drug efflux pump. Moreover, The BioZyne P-gp server outputs the…

A A A Chemotherapy… Chemotherapy ResistancE-Associated MiRSNP Database

CREAM Chemotherapy ResistancE-Associated MiRSNP Database

A free online database depositing the functional miRSNP associated with…

A free online database depositing the functional miRSNP associated with chemotherapy resistance. CREAM can constitute an authoritative resource for the chemotherapy research and clinical practice…

HerceptinR HerceptinR

HerceptinR

A database of assays performed to test sensitivity or resistance of Herceptin…

A database of assays performed to test sensitivity or resistance of Herceptin Antibodies towards breast cancer cell lines.

Web app
ResistanceMap ResistanceMap

ResistanceMap

A collection of tools summarizing national and subnational data on…

A collection of tools summarizing national and subnational data on antimicrobial use and resistance in North America and Europe.

BacMet BacMet

BacMet

An easy-to-use bioinformatics resource of antibacterial biocide- and…

An easy-to-use bioinformatics resource of antibacterial biocide- and metal-resistance genes.

Comprehensive… Comprehensive Antibiotic Resistance Database

CARD Comprehensive Antibiotic Resistance Database

Integrates disparate molecular and sequence data and provides a unique…

Integrates disparate molecular and sequence data and provides a unique organizing principle in the form of the Antibiotic. CARD is a manually curated resource containing high quality reference data…

HCMV drug resistance… HCMV drug resistance mutations

HCMV drug resistance mutations

A tool linking human cytomegalovirus drug resistance mutations to resistance…

A tool linking human cytomegalovirus drug resistance mutations to resistance phenotypes.

MUBII-TB-DB MUBII-TB-DB

MUBII-TB-DB

A structured database of the mutations occurring at seven loci of major…

A structured database of the mutations occurring at seven loci of major therapeutic value in tuberculosis management.

The AntiMicrobial… The AntiMicrobial Index

TAMI The AntiMicrobial Index

Contains both susceptibility and potency data for thousands of microorganisms…

Contains both susceptibility and potency data for thousands of microorganisms and antimicrobial agents.

Tuberculosis drug… Tuberculosis drug resistance mutation database

Tuberculosis drug resistance mutation database

Enables the development of sequence based tools for diagnosis and surveillance…

Enables the development of sequence based tools for diagnosis and surveillance of drug resistance in tuberculosis.

Beta-Lactamase… Beta-Lactamase Database

BLAD Beta-Lactamase Database

A comprehensive database of widely circulated B-Lactamases.

A comprehensive database of widely circulated B-Lactamases.

Lactamase Engineering… Lactamase Engineering Database

LacED Lactamase Engineering Database

Enables a systematic analysis of TEM beta-lactamase sequence and annotation…

Enables a systematic analysis of TEM beta-lactamase sequence and annotation data from different data sources.

SHV beta-Lactamase… SHV beta-Lactamase Engineering Database

SHVED SHV beta-Lactamase Engineering Database

Developed to collect the SHV beta-lactamase sequences from the NCBI protein…

Developed to collect the SHV beta-lactamase sequences from the NCBI protein database and the SHV mutation table.

Web app
Cancer Drug… Cancer Drug Resistance database

CancerDR Cancer Drug Resistance database

Provides information of 148 anti-cancer drugs, and their pharmacological…

Provides information of 148 anti-cancer drugs, and their pharmacological profiling across 952 cancer cell lines. CancerDR provides comprehensive information about each drug target that includes; (i)…

Antibiotic Resistance… Antibiotic Resistance Genes Database

ARDB Antibiotic Resistance Genes Database

Provides a centralized compendium of information on antibiotic resistance and…

Provides a centralized compendium of information on antibiotic resistance and facilitates the consistent annotation of resistance information in newly sequenced organisms.

HIV databases HIV databases

HIV databases

Contain data on HIV genetic sequences, immunological epitopes, drug…

Contain data on HIV genetic sequences, immunological epitopes, drug resistance-associated mutations, and vaccine trials.

HIV Drug Resistance… HIV Drug Resistance Database

HIV Drug Resistance Database

A curated public database designed to represent, store, and analyse the…

A curated public database designed to represent, store, and analyse the divergent forms of data underlying HIV drug resistance.

European… European Antimicrobial Resistance Surveillance…
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