Predicting the best treatment strategy from genomic information is a core goal of precision medicine.

Source text:
(Costello et al., 2014) A community effort to assess and improve drug sensitivity prediction algorithms. Nat Biotechnol.

CCLE
Dataset

CCLE Cancer Cell Line Encyclopedia

Provides a compilation of gene expression, chromosomal copy number, and…

Provides a compilation of gene expression, chromosomal copy number, and massively parallel sequencing data from human cancer cell lines. The resulting collection encompasses 36 tumor types. The…

TANDEM
Desktop

TANDEM

Employs a two-stage analysis to improve the interpretability of prediction…

Employs a two-stage analysis to improve the interpretability of prediction models by preferentially using the data types upstream of gene expression. To this end, we first split the molecular data…

GDSC
Dataset

GDSC Genomics of Drug Sensitivity in Cancer

An academic research program to identify molecular features of cancers that…

An academic research program to identify molecular features of cancers that predict response to anti-cancer drugs.

DBGC
Dataset

DBGC Database of Human Gastric Cancer

A comprehensive database that integrates various human gastric cancer-related…

A comprehensive database that integrates various human gastric cancer-related data resources. DBGC collects and unifies Human gastric cancer-related transcriptomics projects, proteomics projects,…

CancerDP
Web

CancerDP

A webserver developed for predicting priority and potency of an anticancer drug…

A webserver developed for predicting priority and potency of an anticancer drug against a cancer cell line using its genomic features, in order to throw light in the field of personalized medicine,…

kbmtl
Desktop

kbmtl Kernelized Bayesian Multitask Learning

Combines kernel-based non-linear dimensionality reduction and binary…

Combines kernel-based non-linear dimensionality reduction and binary classification (or regression). kbmtl main feature is the joint Bayesian formulation of projecting data points into a shared…

DCB
Dataset

DCB Drug and Cell-line Browser

An online interactive HTML5 data visualization tool for interacting with three…

An online interactive HTML5 data visualization tool for interacting with three of the recently published datasets of cancer cell-lines/drug-viability studies.

NCI60 proteome…
Dataset

NCI60 proteome resource

A web application that facilitates comprehensive proteome analysis of the…

A web application that facilitates comprehensive proteome analysis of the NCI-60 cell line panel.

HerceptinR
Dataset

HerceptinR

A database of assays performed to test sensitivity or resistance of Herceptin…

A database of assays performed to test sensitivity or resistance of Herceptin Antibodies towards breast cancer cell lines.

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.