Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Drug sensitivity prediction tools

Predicting the best treatment strategy from genomic information is a core goal of precision medicine.

Source text:
(Costello et al., 2014) A community effort to assess and improve drug sensitivity prediction algorithms. Nat Biotechnol.

GR Calculator
Web

GR Calculator

Allows to calculate and mine drug-response data. GR Calculator permits to…

Allows to calculate and mine drug-response data. GR Calculator permits to proceed analysis, and visualization of growth rate (GR) inhibition metrics. It can quantify how drug sensitivity changes in…

TANDEM
Desktop

TANDEM

Employs a two-stage analysis to improve the interpretability of prediction…

Employs a two-stage analysis to improve the interpretability of prediction models by preferentially using the data types upstream of gene expression. To this end, we first split the molecular data…

MDP
Web

MDP Mutations and Drugs Portal

Allows users to predict cancer cell lines mutations and drugs sensitivity…

Allows users to predict cancer cell lines mutations and drugs sensitivity dependencies. MDP provides a web interface that permits to inquire the National Cancer Institute's anticancer drug…

kMTrace
Desktop

kMTrace

Predicts drug response from gene expression data. kMTrace utilizes kernelized…

Predicts drug response from gene expression data. kMTrace utilizes kernelized multi¬task learning method for anti¬cancer drug activity prediction which aims to be a software easy to parameter,…

EGFRpred
Web

EGFRpred

Predicts inhibitors of mutant form of Epidermal Growth Factor Receptor (EGFR).…

Predicts inhibitors of mutant form of Epidermal Growth Factor Receptor (EGFR). EGFRpred provides a web server and a standalone package. Users only needs to submit a scaffold structure along with the…

Drug response…
Desktop

Drug response prediction

Predicts cancer drug response. Drug response prediction is based on a support…

Predicts cancer drug response. Drug response prediction is based on a support vector machine (SVM) algorithm that utilizes standard recursive feature elimination (RFE) methods. It was utilized to…

pRRophetic
Desktop

pRRophetic

Allows prediction of drug response from patient tumor gene expression data.…

Allows prediction of drug response from patient tumor gene expression data. pRRophetic can be used to predict non-clinical phenotypes, user-defined training sets and continuous and categorical…

GDSC
Dataset

GDSC Genomics of Drug Sensitivity in Cancer

An academic research program to identify molecular features of cancers that…

An academic research program to identify molecular features of cancers that predict response to anti-cancer drugs.

CancerDP
Web

CancerDP

A webserver developed for predicting priority and potency of an anticancer drug…

A webserver developed for predicting priority and potency of an anticancer drug against a cancer cell line using its genomic features, in order to throw light in the field of personalized medicine,…

kbmtl
Desktop

kbmtl Kernelized Bayesian Multitask Learning

Combines kernel-based non-linear dimensionality reduction and binary…

Combines kernel-based non-linear dimensionality reduction and binary classification (or regression). kbmtl main feature is the joint Bayesian formulation of projecting data points into a shared…

DCB
Dataset

DCB Drug and Cell-line Browser

An online interactive HTML5 data visualization tool for interacting with three…

An online interactive HTML5 data visualization tool for interacting with three of the recently published datasets of cancer cell-lines/drug-viability studies.

NCI60 proteome…
Dataset

NCI60 proteome resource

A web application that facilitates comprehensive proteome analysis of the…

A web application that facilitates comprehensive proteome analysis of the NCI-60 cell line panel.

GRmetrics
Desktop

GRmetrics

Allows to calculate and visualize growth-rate inhibition (GR) metrics.…

Allows to calculate and visualize growth-rate inhibition (GR) metrics. GRmetrics is able to create boxplots of a given GR metric or traditional metric for values of the grouping variable.

HerceptinR
Dataset

HerceptinR

A database of assays performed to test sensitivity or resistance of Herceptin…

A database of assays performed to test sensitivity or resistance of Herceptin Antibodies towards breast cancer cell lines.

CCLE
Dataset

CCLE Cancer Cell Line Encyclopedia

Provides a compilation of gene expression, chromosomal copy number, and…

Provides a compilation of gene expression, chromosomal copy number, and massively parallel sequencing data from human cancer cell lines. The resulting collection encompasses 36 tumor types. The…

DBGC
Dataset

DBGC Database of Human Gastric Cancer

A comprehensive database that integrates various human gastric cancer-related…

A comprehensive database that integrates various human gastric cancer-related data resources. DBGC collects and unifies Human gastric cancer-related transcriptomics projects, proteomics projects,…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.