Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Drug-target interaction databases | Drug discovery

There are at least two good reasons for the on-going interest in drug-target interactions: first, drug-effects can only be fully understood by considering a complex network of interactions to multiple targets (so-called off-target effects) including…
STITCH
Dataset

STITCH Search Tool for Interactions of Chemicals

A resource to explore known and predicted interactions of chemicals and…

A resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the…

TiPs
Dataset

TiPs

Includes information on 5153 putative drug–target pairs for 150 human…

Includes information on 5153 putative drug–target pairs for 150 human pathogens derived from available drug–target crystallographic complexes. The TIPs database has been developed with the aim of…

DrugBank
Dataset

DrugBank

A comprehensive online database containing extensive biochemical and…

A comprehensive online database containing extensive biochemical and pharmacological information about drugs, their mechanisms and their targets. Since it was first described in 2006, DrugBank has…

Supertarget
Dataset

Supertarget

Integrates drug-related information associated with medical indications,…

Integrates drug-related information associated with medical indications, adverse drug effects, drug metabolism, pathways and Gene Ontology (GO) terms for target proteins. At present, the updated…

DGIdb
Dataset

DGIdb Drug–Gene Interaction database

Consolidates disparate data sources describing drug-gene interactions and gene…

Consolidates disparate data sources describing drug-gene interactions and gene druggability. DGIdb provides an online platform for finding several types of data. This resource organizes and shows…

MATADOR
Dataset

MATADOR

A resource for protein-chemical interactions. MATADOR differs from other…

A resource for protein-chemical interactions. MATADOR differs from other resources such as DrugBank in its inclusion of as many direct and indirect interactions as we could find. In contrast,…

CancerResource
Dataset

CancerResource

A comprehensive knowledgebase for drug-target relationships related to cancer…

A comprehensive knowledgebase for drug-target relationships related to cancer as well as for supporting information or experimental data. CancerResource contains about 91 000 drug-target relations,…

TTD
Dataset

TTD Therapeutic Target Database

Provides information about the known and explored therapeutic protein and…

Provides information about the known and explored therapeutic protein and nucleic acid targets, the targeted disease, pathway information and the corresponding drugs directed at each of these…

PubAngioGen
Dataset

PubAngioGen

Displays a comprehensive network for exploring the connection between…

Displays a comprehensive network for exploring the connection between angiogenesis and diseases at multilevels including protein-protein interaction, drug-target, disease-gene and signaling pathways…

NetwoRx
Dataset

NetwoRx Connecting Drugs to Networks and Phenotypes in Saccharomyces Cerevisiae

Compiles information about yeast chemogenomic screening data. NetwoRx…

Compiles information about yeast chemogenomic screening data. NetwoRx integrates three larges chemogenomic experiments, covering nearly 6000 yeast genes and about 460 drugs. Moreover, the database…

AlzhCPI
Dataset

AlzhCPI

Integrates comprehensive information approximately 200 binary classifiers into…

Integrates comprehensive information approximately 200 binary classifiers into a web-based information system. AlzhCPI aims to apply the multi-target quantitative structure activity relationship…

PDID
Dataset

PDID Protein-Drug Interaction Database

Provides access to a comprehensive set of putative and native protein-drug…

Provides access to a comprehensive set of putative and native protein-drug interactions in the structural human proteome. The structural human proteome includes about 10,000 human and human-like…

DrumPID
Dataset

DrumPID Drug-minded Protein Interaction Database

Gathers information on drugs and their protein networks including indications,…

Gathers information on drugs and their protein networks including indications, protein targets and side-targets. DrumPID allows users to understand and screen compounds for their effects in protein…

Haptimol_RD
Desktop

Haptimol_RD

Enables the study of large systems such as when two proteins interact.…

Enables the study of large systems such as when two proteins interact. Haptimol_RD is an interactive haptics-assisted docking application that can facilitate, at haptic refresh rates, the study of…

ExCAPE-DB
Dataset

ExCAPE-DB Exascale Compound Activity Prediction Engine DataBase

Provides a database established for sharing active and inactive compounds from…

Provides a database established for sharing active and inactive compounds from both PubChem and ChEMBL. ExCAPE-DB is a searchable open access database that serves as a data hub for giving researchers…

antibacTR
Dataset

antibacTR Antobacterial Target Ranking

Informs users about different types of protein. antibacTR integrates a database…

Informs users about different types of protein. antibacTR integrates a database with a pipeline that ranks and filters proteins according to a set of criteria commonly associated to antibacterial…

iEzy-Drug
Web

iEzy-Drug

Predicts interaction between drug and enzyme in cellular networking. iEzy-Drug…

Predicts interaction between drug and enzyme in cellular networking. iEzy-Drug improves the prediction quality thank to it capability to introduce the 2D molecular fingerprints to represent drug…

KEGG DRUG
Dataset

KEGG DRUG

Contains a comprehensive collection of approved drugs in Japan, USA and Europe…

Contains a comprehensive collection of approved drugs in Japan, USA and Europe unified based on chemical structures and/or chemical components. KEGG DRUG is a database which contains information…

Integrity
Dataset

Integrity

Hosts a knowledgebase designed for drug discovery. The Integrity database…

Hosts a knowledgebase designed for drug discovery. The Integrity database contains a large collection of drugs which are annotated with information on their respective drug targets, the diseases they…

PathAct
Web

PathAct

Uses the measurements of gene expression in a given condition as reference and…

Uses the measurements of gene expression in a given condition as reference and calculates the signaling activity of all the signaling circuits represented in the pathways. PathAct is a web server…

Onco-Regulon
Dataset

Onco-Regulon

An integrated database and software suite for site specific targeting of…

An integrated database and software suite for site specific targeting of transcription factors of cancer genes. Onco-Regulon combines into a single platform (i) a database of functional regulatory…

FiloBase
Dataset

FiloBase

A comprehensive drug target database for lymphatic filariasis (Lf), one of the…

A comprehensive drug target database for lymphatic filariasis (Lf), one of the oldest and most debilitating tropical diseases. FiloBase models and stores therapeutic targets for Lf. In addition,…

PDTD
Dataset

PDTD Potential Drug Target Database

A dual function database that associates an informatics database to a…

A dual function database that associates an informatics database to a structural database of known and potential drug targets. PDTD is a comprehensive, web-accessible database of drug targets, and…

MTLD
Dataset

MTLD Multiple Target Ligand Database

A database derived from Protein Data Bank. The MTLD collects the ligands which…

A database derived from Protein Data Bank. The MTLD collects the ligands which may bind to multiple different targets that have been verified by 3D-structures. This database contains 1,732…

Clostridium-DT(…
Dataset

Clostridium-DT(DB)

A database focusing on the potential drug targets of Clostridium difficile and…

A database focusing on the potential drug targets of Clostridium difficile and provides a gateway to the information obtained from sequence annotation of clostridium and human host.

Malaria Data
Dataset

Malaria Data

Provides a fully searchable and downloadable resource for publicly available…

Provides a fully searchable and downloadable resource for publicly available compounds, targets, assays and data for malaria research. Malaria Data is a database that includes compounds from the MMV…

CARLSBAD
Dataset

CARLSBAD

An integrated resource, focused on high-quality subsets from several…

An integrated resource, focused on high-quality subsets from several bioactivity databases, which are aggregated and presented in a uniform manner, suitable for the study of the relationships between…

COPICAT
Dataset

COPICAT

Allows prediction for interactions between any protein and chemical compound.…

Allows prediction for interactions between any protein and chemical compound. COPICAT is a statistical method that requires protein sequence data and chemical structure data and utilizes the…

PhIN
Dataset

PhIN

Gathers information about protein pharmacology interaction network. PhIN aims…

Gathers information about protein pharmacology interaction network. PhIN aims to assist multi-target drug discovery by providing comprehensive and flexible network pharmacology analysis. Users can…

UCDB
Dataset

UCDB Ulcerative Colitis Database

Catalogs the genes showing evidence in ulcerative colitis (UC) pathogenesis (UC…

Catalogs the genes showing evidence in ulcerative colitis (UC) pathogenesis (UC GENE), drugs used in chemotherapy (UC DRUG), UC susceptibility single nucleotide polymorphism (SNP) loci (UC LOCUS),…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.