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DSAP specifications

Information


Unique identifier OMICS_00357
Name DSAP
Interface Web user interface
Restrictions to use None
Biological technology Illumina
Computer skills Basic
Stability No
Maintained No

Publication for DSAP

DSAP in publications

 (6)
PMCID: 5808213
PMID: 29467792
DOI: 10.3389/fgene.2018.00022

[…] are several tools for mirna-seq data analysis and some have been evaluated for different purposes in previous studies. compared eight tools: mirdeep (), miranalyzer (), mirexpress (), mirtrap (), dsap (), mirtools (), mirena (), mirnakey (), and mireap (). they selected three data sets (caenorhabditis elegans, gallus gallus, and human embryonic stem cells) to evaluate the sensitivity, […]

PMCID: 5592198
PMID: 28932224
DOI: 10.3389/fimmu.2017.01084

[…] sequence (cgccttggccgtacagcag) was then removed using cutadapt (), with maximum error rate set to 0.1 and minimum overlap length set to 6. reads with a selected length of 17–25 bp were converted to dsap () input file format and uploaded to the dsap web server. known non-coding rnas (e.g., trna and rrna) were removed using the rfam database, and expression profiles of known mirnas were reported […]

PMCID: 4785739
PMID: 26961822
DOI: 10.1186/s12920-016-0174-9

[…] then, we converted the fastq file to a tab-delimited file, which held only the unique sequence read (tag) and the corresponding number of copies. after data preprocessing, we uploaded this file to dsap (http://dsap.cgu.edu.tw) for the clustering of tags and classification of non-coding small rnas and mirnas based on sequencing homology searches against the rfam and mirbase databases, […]

PMCID: 4169864
PMID: 25189322
DOI: 10.1186/1471-2164-15-759

[…] file was then converted to a tab-delimited file which held only the unique sequence read (tag) and its corresponding number of copies. after preprocessing these data, the files were uploaded to dsap (http://dsap.cgu.edu.tw/index.htm) for clustering of the tags and the classification of non-coding small rnas and mirnas based on a sequencing homology search against the rfam and mirbase […]

PMCID: 4411353
PMID: 24755403
DOI: 10.1016/j.gpb.2014.02.001

[…] mapping. we used perl scripts to clip 3′-adaptor and 5′-adaptor contaminations and further removed poly (a)-containing or low-quality reads. the filtered reads were further clustered and uploaded to dsap , an automated web service that provides analytical solutions for srna sequencing data. the numbers of reads mapped to individual mirnas were further normalized to the cf, which indicates […]


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DSAP institution(s)
Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu, Taiwan

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