DSSPcont statistics

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Associated diseases

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DSSPcont specifications

Information


Unique identifier OMICS_19955
Name DSSPcont
Interface Web user interface
Restrictions to use None
Input data A protein.
Computer skills Basic
Stability No
Maintained No

Publication for DSSPcont

DSSPcont in publications

 (6)
PMCID: 5347031
PMID: 28287151
DOI: 10.1038/srep44341

[…] myosin-6 and its k-only and r-only mutants (m6wt, m6k, m6r)., wordom was used to analyse the simulation trajectories. the secondary structure of the protein was assigned for each timeframe using the dsspcont criteria. this was then used to calculate the helicity (or average helical fraction) of the protein overall. for the salt bridge analysis, the distance between lys nζ and the centroid […]

PMCID: 4661811
PMID: 26540053
DOI: 10.3390/ijms161125952

[…] (ss) provides local and geometric patterns, which can be obtained in two ways: one is that the protein structure is available and real ss could be calculated using ss assignment approach such as dsspcont [,], the other is that the protein structure is unavailable and predicted ss could be obtained using ss predicted algorithm such as psipred [,,]. ss has been employed as an encoding feature […]

PMCID: 4394471
PMID: 25756377
DOI: 10.3390/ijms16035194

[…] prediction methods [,] (e.g., psipred []); for a structural-based prediction, the sss can be calculated from the corresponding structure through secondary structure assignment methods [] (e.g., dsspcont []). several studies have employed the sss of a residue as the encoding information in the prediction of dna–binding residues. note that the secondary structure was not considered […]

PMCID: 4183817
PMID: 25122759
DOI: 10.1074/jbc.M114.585679

[…] and c-terminal carbonyl carbon atom (rnc)) of at least 8 nm had been reached. wordom (version 21) was used to analyze the simulation trajectories (, ). helicity values were calculated using wordom “dsspcont” assignments of residue secondary structure., the aim of the experiments reported here was to test the force-extension properties of a sah domain. we chose to use the putative sah domain […]

PMCID: 2894858
PMID: 20614028
DOI: 10.1371/journal.pone.0011378

[…] s: bend)., α: helical chirality (dihedral α angle – positive angle corresponds to a right-handed helix)., rrgx: any of the tetrapeptides reported in ., all ss and α values were calculated with the dsspcont program dsspcont: continuous secondary structure assignments for proteins ., a helical backbone conformation is also observed in the zn-chelating cratkml plm, similarly encompassing […]


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DSSPcont institution(s)
CUBIC, Department of Biochemistry and Molecular Biophysics and 2 North East Structural Genomics Consortium (NESG), Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA; BASF AG, Ludwigshafen, Germany; Structural Bioinformatics Group, Department of Biological Sciences, Imperial College, London, UK; Columbia University Center for Computational Biology and Bioinformatics (C2B2), Russ Berrie Pavilion, New York, NY, USA
DSSPcont funding source(s)
Supported by the grants 1-P50- GM62413-01 and RO1-GM63029-01 from the National Institute of Health (NIH).

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