DtaRefinery protocols

DtaRefinery computational protocol

DtaRefinery specifications


Unique identifier OMICS_09657
Name DtaRefinery
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes


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  • person_outline Richard Smith <>

Publication for DtaRefinery

DtaRefinery IN pipelines

PMCID: 5468372
PMID: 28659875
DOI: 10.3389/fmicb.2017.01020

[…] contaminant protein sequences (human keratin, bovine trypsin, and serum albumin precursor) to detect residual peptides derived from processing. ms/ms spectra were preprocessed using deconmsn and dtarefinery tools to deconvolute, deisotope, and remove systematic error in mass measurement accuracy (mayampurath et al., 2008; petyuk et al., 2010). the ms-gf+ search algorithm was used to match […]

PMCID: 3430228
PMID: 22942697
DOI: 10.3390/ijms13078171

[…] heated capillary was maintained at 175 °c, while the spray voltage was kept at 2.2 kv., raw ms/ms files were processed with deconmsn (version, pacific northwest national laboratory (pnl)), dtarefinery (version 1.1, pnl) and dtatexttomgf (version 1.2.3952, pnl) to produce mgf files. sequence assignment was performed using omssa ms/ms search engine [70] (version 2.1.9, national center […]

DtaRefinery institution(s)
The Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA
DtaRefinery funding source(s)
This work was supported, in whole or in part, by National Institutes of Health Grant RR18522 from the National Center for Research Resources.

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