DualAligner specifications


Unique identifier OMICS_04879
Name DualAligner
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for DualAligner

DualAligner citations


Unified Alignment of Protein Protein Interaction Networks

Sci Rep
PMCID: 5430463
PMID: 28424527
DOI: 10.1038/s41598-017-01085-9
call_split See protocol

[…] ains 2,770 alignments. We do not include ISORANK, MI-GRAAL, GHOST, or NETAL in this study, as they fail to produce alignments for all of the pairs of networks that we consider. We also do not include DUALALIGNER, as it requires GO annotations to produce alignments, while we use GO to assess the quality of the alignments. […]


Indexing a protein protein interaction network expedites network alignment

BMC Bioinformatics
PMCID: 4600321
PMID: 26453444
DOI: 10.1186/s12859-015-0756-0

[…] maps (clustering) of a PPI network at different levels of granularity. It presents the underlying PPI network as a functional summary graph of interconnected functional modules. Recent works such as DualAligner [] incorporates functional annotation (e.g., Gene Ontology (GO) terms) informations with the interaction data to align networks in multiple granularities. DualAligner performs protein-to-p […]

DualAligner institution(s)
Division of Software and Information Systems, School of Computer Engineering, Nanyang Technological University, Singapore-MIT Alliance, Nanyang Technological University, Singapore; Biological Engineering Department, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA

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