DuffyNGS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool DuffyNGS
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Tool usage distribution map

This map represents all the scientific publications referring to DuffyNGS per scientific context
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Associated diseases

This word cloud represents DuffyNGS usage per disease context
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Popular tool citations

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Protocols

DuffyNGS specifications

Information


Unique identifier OMICS_17846
Name DuffyNGS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Version 1.4.0
Stability Stable
Maintained Yes

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Versioning


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Maintainer


  • person_outline Bob Morrison

DuffyNGS citations

 (2)
call_split

Cell envelope stress in mycobacteria is regulated by the novel signal transduction ATPase IniR in response to trehalose

2017
PLoS Genet
PMCID: 5760070
PMID: 29281637
DOI: 10.1371/journal.pgen.1007131
call_split See protocol

[…] g was done using Illumina Nextseq with libraries generated using the NEBNext directional library kit (NEB). Alignment to the H37Rv genome was done using Bowtie 2.0 [], read depth was determined using DuffyNGS tools (available at https://github.com/sturkarslan/DuffyNGS), and visualized using Arraystar (DNASTAR). […]

call_split

Cyclic GMP Balance Is Critical for Malaria Parasite Transmission from the Mosquito to the Mammalian Host

2015
MBio
PMCID: 4453516
PMID: 25784701
DOI: 10.1128/mBio.02330-14
call_split See protocol

[…] Raw FASTQ read data were processed using in-house R package DuffyNGS as originally described (). Briefly, raw reads pass through a 3-stage alignment pipeline: (i) a prealignment stage to filter out unwanted transcripts, such as rRNA, mitochondrial RNA, albumin […]


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