duphold specifications

Information


Unique identifier OMICS_32876
Name duphold
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some SV calls and a reference.
Input format BAM/CRAM+VCF/BCF+FASTA
Operating system Unix/Linux, Mac OS
Programming languages Python
License MIT License
Computer skills Advanced
Version 0.0.9
Stability Stable
Requirements
htslib.so
Maintained Yes

Download


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Versioning


No version available

Maintainers


  • person_outline Brent Pedersen
  • person_outline Aaron R. Quinlan

Publication for duphold

duphold institution(s)
Department of Human Genetics, University of Utah, Salt Lake City, UT, USA; Department of Biomedical Informatics, University of Utah, Salt Lake City, UT, USA; USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UT, USA
duphold funding source(s)
Supported by the US National Institutes of Health National grants from the National Human Genome Research Institute (R01HG006693 and R01HG009141), the National Institute of General Medical Sciences (R01GM124355), and the National Cancer Institute (U24CA209999).

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