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Number of citations per year for the bioinformatics software tool DuplexFinder

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DuplexFinder specifications


Unique identifier OMICS_19965
Name DuplexFinder
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No


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Publication for DuplexFinder

DuplexFinder citation


Using Small RNA seq Data to Detect siRNA Duplexes Induced by Plant Viruses

PMCID: 5485527
PMID: 28621718
DOI: 10.3390/genes8060163
call_split See protocol

[…] genome length. The x–nt duplex (x represents the duplex length) proportion is calculated as the read count of x–nt siRNA duplexes with 2 nt overhangs divided by the count of viral reads. The program duplexfinder was developed to detect siRNA duplexes []. Statistics and plotting were conducted using the software R v2.15.3 with the Bioconductor packages []. […]

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DuplexFinder institution(s)
School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China
DuplexFinder funding source(s)
Supported by the Natural Science Foundation of China under Grant No. 60932008, the Science Fund for Distinguished Young Scholars of Heilongjiang Province in China under Grant No. JC200611, the Natural Science Foundation of Heilongjiang Province in China under Grant No. ZJG0705, and the General Program about Science and Technology Research of Heilongjiang Province Educational Commission with No. 11541263.

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