DLRSOrthology specifications

Information


Unique identifier OMICS_13053
Name DLRSOrthology
Alternative name Duplication Loss Rate and Sequence Orthology
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Multiple sequence alignment, dated species tree
Output data Tree figure, tree-by-tree based orthology, consensus tree, gene pair orthologies, virtual vertices
Output format SVG, OUTPUT, TREE, TREE.ALL.PAIRS, PROBS
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Requirements CMake, Fortan compiler, Gengetopt, Blas, Lapack, Bison, Flex, Xerces-C++, OpenMPI, LibXML2, XSD, Boost, SVN
Source code URL http://www.nada.kth.se/~ikramu/dlrsorthology/downloads/primephylo.tar.gz
Maintained Yes

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Documentation


Maintainer


  • person_outline Jens Lagergren <>

DLRSOrthology article

DLRSOrthology institution(s)
School of Computer Science and Communication, Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden; Department of Numerical Analysis and Computer Science, Science for Life Laboratory, Stockholm University, Stockholm, Sweden; School of Computer Science and Communication, KTH Royal Institute of Technology, Stockholm, Sweden; Atherosclerosis Research Unit, Department of Medicine, Science for Life Laboratory, Karolinska Institutet, Solna, Sweden; School of Computer Science and Communication, Science for Life Laboratory, Swedish e-Science Research Center, KTH Royal Institute of Technology, Stockholm, Sweden
DLRSOrthology funding source(s)
The Swedish eScience-Research Center, The Swedish Research Council (2010-4757), University of Engineering and Technology, Peshawar, Pakistan, Magnus Bergvall Foundation, the Foundation for Old Servants

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