DLRSOrthology specifications

Unique identifier:
OMICS_13053
Software type:
Package/Module
Restrictions to use:
None
Output data:
Tree figure, tree-by-tree based orthology, consensus tree, gene pair orthologies, virtual vertices
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
CMake, Fortan compiler, Gengetopt, Blas, Lapack, Bison, Flex, Xerces-C++, OpenMPI, LibXML2, XSD, Boost, SVN
Maintained:
Yes
Name:
Duplication Loss Rate and Sequence Orthology
Interface:
Command line interface
Input data:
Multiple sequence alignment, dated species tree
Output format:
SVG, OUTPUT, TREE, TREE.ALL.PAIRS, PROBS
Programming languages:
C++
Stability:
Stable
Source code URL:
http://www.nada.kth.se/~ikramu/dlrsorthology/downloads/primephylo.tar.gz

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DLRSOrthology distribution

download

DLRSOrthology support

Documentation

Maintainer

  • Jens Lagergren <>

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Publications

Institution(s)

School of Computer Science and Communication, Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden; Department of Numerical Analysis and Computer Science, Science for Life Laboratory, Stockholm University, Stockholm, Sweden; School of Computer Science and Communication, KTH Royal Institute of Technology, Stockholm, Sweden; Atherosclerosis Research Unit, Department of Medicine, Science for Life Laboratory, Karolinska Institutet, Solna, Sweden; School of Computer Science and Communication, Science for Life Laboratory, Swedish e-Science Research Center, KTH Royal Institute of Technology, Stockholm, Sweden

Funding source(s)

The Swedish eScience-Research Center, The Swedish Research Council (2010-4757), University of Engineering and Technology, Peshawar, Pakistan, Magnus Bergvall Foundation, the Foundation for Old Servants

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