DupRecover specifications

Information


Unique identifier OMICS_02201
Name DupRecover
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Ken Chen <>
  • person_outline Wanding Zhou <>

Publication for DupRecover

DupRecover in publication

PMCID: 4179624
PMID: 25288881
DOI: 10.4137/CIN.S13779

[…] higher), where removing large amounts of duplicates may affect allele frequency-based tumor subclone discovery and cnv detection. to address this issue, zhou et al. proposed a quantitative solution, duprecover, which systematically estimates the degree of pcr-introduced bias and corrects for allele fractions., after duplicate removal, the second step is to identify genomic regions that contain […]


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DupRecover institution(s)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Institute of Personalized Cancer Therapy, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Investigational Cancer Therapy, The University of Texas MD Anderson Cancer Center, Houston, TX, USA
DupRecover funding source(s)
Supported by the National Cancer Institute [grant R01-CA172652-01 and grant P30 CA016672]; the MD Anderson Odyssey recruitment fellowship and the MD Anderson Cancer Center Sheikh Khalifa Ben Zayed Al Nahyan Institute of Personalized Cancer Therapy.

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