DWGSIM protocols

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description
DWGSIM computational protocol

DWGSIM specifications

Information


Unique identifier OMICS_00249
Name DWGSIM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, Perl, Python
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.1.12
Stability Stable
Maintained No

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Publication for DWGSIM

DWGSIM IN pipelines

 (3)
2018
PMCID: 5945760
PMID: 29478186
DOI: 10.1007/s00122-018-3077-7

[…] or gain of each chromosome of nipponbare or 93-11 in turn (successively). the simulated files were exported as fasta files. next, the 48 simulated fasta files were randomly broken into reads using dwgsim (http://davetang.org/wiki/tiki-index.php?page=dwgsim). in this manner, the simulated fasta datasets were generated with the same criteria as the actual sequencing data except […]

2018
PMCID: 5945760
PMID: 29478186
DOI: 10.1007/s00122-018-3077-7

[…] turn (successively). the simulated files were exported as fasta files. next, the 48 simulated fasta files were randomly broken into reads using dwgsim (http://davetang.org/wiki/tiki-index.php?page=dwgsim). in this manner, the simulated fasta datasets were generated with the same criteria as the actual sequencing data except that the simulated sequencing depth was 1x of the msu7.0 nipponbare […]

2012
PMCID: 3522660
PMID: 23251474
DOI: 10.1371/journal.pone.0051263

[…] carried out on an intel macintosh quadcore with 14 go ram. simulations of ‘titanium’ 454 reads from mitogenomes were obtained using 454 sim [25]. ion torrent and illumina reads were simulated using dwgsim, which is based upon wgsim from samtools package [26]. both single- and paired-end reads were generated. ion torrent and illumina read simulations were generated with errors rate of 0.02 per […]

DWGSIM institution(s)
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK; Broad Institute of MIT and Harvard, Cambridge, MA, USA; Beijing Institute of Genomics, Chinese Academy of Science, Beijing, China; Department of Computer Science, University of California Los Angeles, Los Angeles, CA, USA; Department of Biology, Boston College, Chestnut Hill, MA, USA; Center for Statistical Genetics, Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA; 1000 Genome Project Data Processing Subgroup
DWGSIM funding source(s)
Supported by Wellcome Trust/077192/Z/05/Z and NIH Hapmap/1000 Genomes Project grant (U54HG002750).

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