dyebias statistics

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dyebias specifications


Unique identifier OMICS_02025
Name dyebias
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.40.0
Stability Stable
limma, methods, Biobase, GEOquery, convert, marray, R(>=1.4.1), dyebiasexamples
Maintained Yes


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Publication for dyebias

dyebias in publications

PMCID: 5009348
PMID: 27586304
DOI: 10.1038/srep32348

[…] .gpr files were obtained from perkin elmer scanner for exiqon mirna arrays. the respective dye-swapped samples were corrected for gene-specific dye-bias using the gassco method implemented in the “dyebias” bioconductor package. for normalization, quantile and loess methods were used. mirna arrays have relatively few spots and unlike mrna expression, mirna expression levels can vary […]

PMCID: 3599401
PMID: 23324568
DOI: 10.1186/1868-7083-5-2

[…] preprocessed by within-array loess normalization followed by between-array aquantile normalization using limma v3.2.1 [] in r2.10.0 []. data were corrected for gene-specific dye bias using r package dyebias v1.4.0 []. raw data and preprocessed log2 ratios (tumor versus normal) per probe are available via the gene expression omnibus (geo) under accession number gse39334. probes mapping […]

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dyebias institution(s)
Department of Physiological Chemistry, University Medical Center Utrecht, Universiteitsweg, Utrecht, Netherlands

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