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Dynamic Analysis of Nucleosome and Protein Occupancy by Sequencing DANPOS

A comprehensive bioinformatics pipeline explicitly designed for dynamic nucleosome analysis at single-nucleotide resolution. DANPOS is also robust in defining functional dynamic nucleosomes, not only in promoters, but also in distal regulatory regions in the mammalian genome.

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1 user review

1 user review

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avilella

Easy to download and run. Minimal dependencies.

DANPOS forum

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DANPOS versioning

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No versioning.

DANPOS classification

DANPOS specifications

Software type:
Pipeline/Workflow
Restrictions to use:
None
License:
GNU General Public License version 2.0
Version:
2.0
Requirements:
R, Python, Rpy, Numpy, samtools
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

Credits

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Publications

Institution(s)

Division of Biostatistics, Dan L Duncan Cancer Center and Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA

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