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Dynamic Reslice specifications

Information


Unique identifier OMICS_25621
Name Dynamic Reslice
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Version 1.2
Stability Stable
Requirements
ImageJ
Maintained Yes

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  • person_outline Jean-Yves Tinevez <>

Dynamic Reslice in publications

 (4)
PMCID: 5703647
PMID: 29107560
DOI: 10.1016/j.devcel.2017.09.018

[…] unpaired student’s t-tests., kymographs were used in order to calculate vertex displacement velocities. in fiji, straight lines (1 pixel thick) were drawn across the pre-ablated junction and the ‘dynamic reslice’ function was used to produce a kymograph (x = length, y = time) of each ablation event. the ‘segmented line’ tool was used to plot the progression of each of the two junction […]

PMCID: 5601202
PMID: 28833173
DOI: 10.1111/nph.14746

[…] palisade mesophyll were determined by hand using the cell counter in fiji (nih; www.fiji.sc/fiji). a transvere cross‐section of the entire leaf (x–z plane, see later fig. 2a) was produced using the dynamic reslice function in fiji on a complete z‐stack. leaf thickness was determined by measuring the distance betweeen the top of the adaxial epidermis and the bottom of the abaxial epidermis […]

PMCID: 5069670
PMID: 27759114
DOI: 10.1038/srep35606

[…] is performed along a line following manually adjusted intersection points. therefore, we aligned the slot data stack according to the procedure described above and subsequently applied the dynamic reslice plugin in imagej to manually retrace the cutting line of the corresponding section., serial sections (3 μm) from the lungs previously analyzed by slot and mpm were stained […]

PMCID: 4915814
PMID: 27183005
DOI: 10.7554/eLife.12094.040

[…] junction would move away from the region of interest due to axis extension movements) and up to at least 30s after ablation., line sections were then manually drawn over ablated junctions and the dynamic reslice tool in imagej was used to produce kymographs. the distances between the two vertices at either end of a junction were measured from 5 time points before ablation until 30s […]


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