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Dynamic Reslice specifications

Information


Unique identifier OMICS_25621
Name Dynamic Reslice
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Version 1.2
Stability Stable
Requirements
ImageJ
Maintained Yes

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Versioning


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Maintainer


  • person_outline Jean-Yves Tinevez

Dynamic Reslice citations

 (4)
library_books

Disruption of stomatal lineage signaling or transcriptional regulators has differential effects on mesophyll development, but maintains coordination of gas exchange

2017
New Phytol
PMCID: 5601202
PMID: 28833173
DOI: 10.1111/nph.14746

[…] d palisade mesophyll were determined by hand using the Cell Counter in Fiji (NIH; www.fiji.sc/Fiji). A transvere cross‐section of the entire leaf (x–z plane, see later Fig. 2a) was produced using the Dynamic Reslice function in Fiji on a complete z‐stack. Leaf thickness was determined by measuring the distance betweeen the top of the adaxial epidermis and the bottom of the abaxial epidermis at thr […]

library_books

A combined method for correlative 3D imaging of biological samples from macro to nano scale

2016
Sci Rep
PMCID: 5069670
PMID: 27759114
DOI: 10.1038/srep35606

[…] sectioning is performed along a line following manually adjusted intersection points. Therefore, we aligned the SLOT data stack according to the procedure described above and subsequently applied the Dynamic Reslice plugin in ImageJ to manually retrace the cutting line of the corresponding section. […]

call_split

Unipolar distributions of junctional Myosin II identify cell stripe boundaries that drive cell intercalation throughout Drosophila axis extension

2016
eLife
PMCID: 4915814
PMID: 27183005
DOI: 10.7554/eLife.12094.040
call_split See protocol

[…] d the junction would move away from the region of interest due to axis extension movements) and up to at least 30s after ablation.Line sections were then manually drawn over ablated junctions and the Dynamic Reslice tool in ImageJ was used to produce kymographs. The distances between the two vertices at either end of a junction were measured from 5 time points before ablation until 30s after ablat […]

call_split

Cellular Mechanisms of Alpha Herpesvirus Egress: Live Cell Fluorescence Microscopy of Pseudorabies Virus Exocytosis

2014
PLoS Pathog
PMCID: 4256261
PMID: 25474634
DOI: 10.1371/journal.ppat.1004535
call_split See protocol

[…] the following functions and plugins in Fiji/ImageJ: adjust brightness and contrast, Kalman filter (to reduce noise in timecourse microscopy images), Z project (to make maximum intensity projections), dynamic reslice (to make kymographs), and save as AVI (to export movies). We calculated maximum difference projections in Fiji/ImageJ as follows: Image values at time n were subtracted from values at […]

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