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Dynamix specifications

Information


Unique identifier OMICS_19290
Name Dynamix
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Javascript
License MIT License
Computer skills Medium
Version 1.2
Stability Stable
Requirements
JBrowse
Source code URL https://git.embl.de/monfort/dynamix/tree/master
Registration required No
Maintained Yes

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Maintainers


  • person_outline Matthias Monfort <>
  • person_outline Charles Girardot <>

Publication for Dynamix

Dynamix in publications

 (15)
PMCID: 5927454
PMID: 29709010
DOI: 10.1371/journal.pone.0196411

[…] separated and washed thrice with distilled water to remove dirt and dried at 50°c for two hours to eliminate moisture. dried leaves were then milled with a grinder (maharani, india, model–sujata dynamix). a fine powdered leaf was stored in a refrigerator at −20°c. one hundred gm of the dried powder was stirred in 1 l of 70% methanol for 10 hours. the mixture was refluxed for 2 hours […]

PMCID: 5794948
PMID: 29437101
DOI: 10.1128/genomeA.01538-17

[…] the nucleotide sequences vary across this region (phamerator.org). the immunity repressor in superphikiman (gp191) is identical to the immunity repressor genes found in the cluster a1 bacteriophages dynamix (gp75) (genbank accession number amd43071) and abrogate (gp72) (genbank accession number yp_009209461). the genome also contains the whib gene (gp126), which is shared by other cluster j […]

PMCID: 5469797
PMID: 28611361
DOI: 10.1038/s41598-017-03457-7

[…] score of 8, maximum mh + error of 3 ppm, a retention time rsd of 5%, and the peptides had to be present in two out of the three identification runs. the peptides identified in plgs were analysed in dynamix 3.0 (waters corporation). the relative deuterium uptake for each peptide was calculated by comparing centroids of the mass envelopes of the deuterated samples with the undeuterated controls […]

PMCID: 5454964
PMID: 28505081
DOI: 10.3390/ijms18051052

[…] was applied to the lectin immobilized column through 2-ml sample loop connected to an injector at a flow rate of 0.25 ml/min at 25 °c. the elution profile of fluorescent markers was monitored with dynamix compare module software (rainin instrument company, tokyo, japan). v and v0 were the elution front volumes of each fluorescent marker and pa-rhamnose, respectively., the results are shown […]

PMCID: 5299419
PMID: 28181578
DOI: 10.1038/srep42291

[…] the western blots were visualized and recorded by the chemiluminescence detection system (amersham, buckinghamshire, uk)., assays were performed according to the manufacturer’s instructions of cyto dynamix screen kit (cytoskeleton inc., denver, co, usa). tubulin protein (10 mg/ml), gtp stock (100 mm), and general tubulin buffer were prepared following the protocol. before detection, a 96-well […]


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Dynamix institution(s)
European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany

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