DynaMO statistics

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Citations per year

Number of citations per year for the bioinformatics software tool DynaMO
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Tool usage distribution map

This map represents all the scientific publications referring to DynaMO per scientific context
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Associated diseases

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DynaMO specifications

Information


Unique identifier OMICS_22316
Name DynaMO
Alternative name dynamic motif occupancy
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data PSFMs or consensus sequences which represent specific sequences TFs recognize and alignments of ChIP-seq reads.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Versioning


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Maintainers


  • person_outline Hongkai Ji
  • person_outline Jef Boeke

Publication for dynamic motif occupancy

DynaMO citation

library_books

Msn2/4 regulate expression of glycolytic enzymes and control transition from quiescence to growth

2017
eLife
PMCID: 5634782
PMID: 28949295
DOI: 10.7554/eLife.29938.025

[…] hly dynamic process like the YMC. We can also identify important TFs associated with specific dynamic programs by enrichment analysis. The functionality has been incorporated in a computational tool, DynaMO (). We used the previously generated 16 time point H3K9ac ChIP-seq data across one round of the YMC () to predict the binding activities of 175 yeast TFs. Three temporal binding patterns were c […]


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DynaMO institution(s)
Institute for Systems Genetics, NYU Langone Medical Center, New York City, NY, USA; Department of Biochemistry and Molecular Pharmacology, NYU Langone Medical Center, New York City, NY, USA; Department of Biostatistics, Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD, USA
DynaMO funding source(s)
Supported by National Institutes of Health (NIH) [U54GM103520, R01HG006841, R01HG006282].

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