DynDom pipeline

DynDom specifications

Information


Unique identifier OMICS_05556
Name DynDom
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for DynDom

DynDom citations

 (3)
2017
PMCID: 5667895

[…] prepared using ccp4mg [69], and interfacial areas were determined using the pisa server (http://www.ebi.ac.uk/msd-srv/prot_int/cgi-bin/piserver) [51]. the dyndom server (http://fizz.cmp.uea.ac.uk/dyndom/rundyndom.jsp) [70] was used to compare subunit rotations within cdp and cbp dimers., the following is the supplementary data related to this article:online data, these studies were supported […]

2009
PMCID: 2847169

[…] partially on linker 1) for which the entire gαi1 was used. the large scale (essential) modes were obtained by diagonalising the cα atom’s covariance matrix [66, 67] and analysed with the program dyndom [68, 69]. as the rmsd of gαi1 increased during the first ~10 ns in the simulation where the goloco peptide was removed (see model structures), this time-interval of md trajectories […]

2007
PMCID: 1933439

[…] of protein hinges. if the structure has been solved in two different conformations, then the hinge can be identified by visual inspection (flores et al., submitted) or by use of flexprot[20] or dyndom[21]. a much more difficult problem arises when only one conformation is known. in an early contribution, janin and wodak[22] developed a domain interface area calculation method. the first […]

DynDom institution(s)
D'Arcy Thompson Centre for Computational Biology, School of Computing Sciences, University of East Anglia, Norwich, UK

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