E-miR statistics

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E-miR specifications

Information


Unique identifier OMICS_10682
Name E-miR
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability No
Maintained Yes

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Maintainer


  • person_outline Henk Buermans <>

Publication for E-miR

E-miR in publications

 (11)
PMCID: 5933750
PMID: 29723239
DOI: 10.1371/journal.pone.0196666

[…] disease. as the 299 mirnas identified in this study matched only partly the 213 mirnas identified previously in la tissue (48), only five mirnas were found commonly altered in both studies (i.e mir-378a-3p, mir-15b-5p, mir-21-5p, mir-125b-5p, and mir-451a). the 42 altered mirnas were predicted to target cellular pathways known to be involved in af (i.e. electrical remodeling, […]

PMCID: 5906690
PMID: 29670141
DOI: 10.1038/s41598-018-24519-4

[…] m-stage ii colon cancer patients. the dichotomized mirna expression values weighted by the coefficients from the lasso regression generated a prognostic index for each patient using the formula where e-mir-n was the dichotomized expression of mirnan.\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{ […]

PMCID: 5907308
DOI: 10.1186/s13098-018-0315-8

[…] nine mirnas were differentially expressed in t1dm patients with different stages of dkd compared to patients without dkd. six mirnas were downregulated (mir-141, mir-16, mir-192, mir-204, mir-215 e mir-29a) and three mirnas were upregulated (mir-21-3p, mir-378 e mir-503) in patients with dkd compared to patients without this complication. moreover, mir-141 and mir-192 were even […]

PMCID: 5762784
PMID: 29321648
DOI: 10.1038/s41598-017-18723-x

[…] that 7 mirnas, i.e. mirna5337a, mir3979-3p, mir2873c, mir1870-3p, mir169e, mir166e-3p, and mir156l-5p, were significantly up-regulated compared with the non-transgenic ck. conversely, 14 mirnas, i.e.mir5799, mir529b, mir399i, mir2863a, mir2118o, mir2118e, mir1874-5p, mir1874-3p, mir1846d-3p, mir1428f-5p, mir1428e-5p, mir1428d, mir1428c and mir1428b, were significantly down-regulated compared […]

PMCID: 5372308
PMID: 28356122
DOI: 10.1186/s13045-017-0445-8

[…] the accuracy by using a linear regression model built on a panel of the combined mirnas (auc = 1): crc risk score = 5.091e_mir-125b–57.423e_mir-145–86.136e_let-7a + 25.798e_mir-195 + 1712.826, where e_mir-n = log 2 (expression of microrna) (fig. ).table 1abbreviation:cea = carcinoembryonicantigen fig. 2 , abbreviation:cea = carcinoembryonicantigen, to further investigate whether the deregulated […]


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E-miR institution(s)
Center for Human and Clinical Genetics, Leiden University Medical Center, ZC Leiden, Netherlands
E-miR funding source(s)
This research was supported by the European Union FP6 program HeartRepair LSHM-CT-2205-018630, a Horizon grant (# 93511015) and Centre for Medical Systems Biology within the framework of the Netherlands Genomics Initiative (NGI)/Netherlands Organisation for Scientific Research (NWO).

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