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Enhanced Read Analysis of Gene Expression ERANGE

A software tool for mapping and quantifying Mammalian transcriptomes by RNA-Seq. The functions of ERANGE are to (i) assign reads that map uniquely in the genome to their site of origin and, for reads that match equally well to several sites ('multireads'), assign them to their most likely site(s) of origin; (ii) detect splice-crossing reads and assign them to their gene of origin; (iii) organize reads that cluster together, but do not map to an already known exon, into candidate exons or parts of exons; and (iv) calculate the prevalence of transcripts from each known or newly proposed RNA, based on normalized counts of unique reads, spliced reads and multireads.

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ERANGE forum

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ERANGE classification

ERANGE specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Python
Version:
4.0
Source code URL:
http://woldlab.caltech.edu/gitweb/?p=erange.git;a=summary
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

ERANGE distribution

versioning

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No versioning.

ERANGE support

Maintainer

  • Sean Upchurch <>

Credits

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Publications

Institution(s)

Division of Biology, MC, California Institute of Technology, Pasadena, CA, USA

Link to literature

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