e-RGA specifications

Information


Unique identifier OMICS_09318
Name e-RGA
Alternative name enhanced Reference Guided Assembly
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Francesco Vezzi <>

Publication for enhanced Reference Guided Assembly

e-RGA in publication

PMCID: 4742680
PMID: 26847883
DOI: 10.1128/genomeA.01609-15

[…] 15 million reads were assembled with velvet 1.1 () and then refined with sequel version 1.0.2 (). the remaining contigs were submitted to the prodege website () for automatic decontamination. e-rga () was applied for genome mapping. the resulting 6,122,906-bp draft genome containing 5,336 genes is rich in g+c content (66.65%). finally, the assembled sequence was submitted to the national […]


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e-RGA institution(s)
DIMI department of Informatics and Mathematics University of Udine, Udine, Italy; IGA institute of applied genomics, Udine, Italy

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