e-RGA statistics

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Citations per year

Number of citations per year for the bioinformatics software tool e-RGA
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Tool usage distribution map

This map represents all the scientific publications referring to e-RGA per scientific context
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e-RGA specifications

Information


Unique identifier OMICS_09318
Name e-RGA
Alternative name enhanced Reference Guided Assembly
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Francesco Vezzi

Publication for enhanced Reference Guided Assembly

e-RGA citations

 (4)
library_books

Cold Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA DELLA Signaling

2018
Front Plant Sci
PMCID: 5807348
PMID: 29459879
DOI: 10.3389/fpls.2018.00091

[…] ent DELLA degradation relies on activity of two F-box proteins SLEEPY1 (SLY1) and SNEEZY (SNE), and the phosphorylation status of DELLA itself (; ; ). In Arabidopsis, there are five DELLA homologs; i.e., RGA, GAI, RGL1, RGL2, and RGL3.During male reproductive development, programmed degradation of the tapetal cell layer during male gametogenesis and pollen maturation strongly relies on balanced GA […]

library_books

Targeted Next Generation Sequencing Identification of Mutations in Disease Resistance Gene Analogs (RGAs) in Wild and Cultivated Beets

2017
Genes
PMCID: 5664114
PMID: 29019931
DOI: 10.3390/genes8100264

[…] ent beet groups, CMS lines (132) had the highest number of SNPs followed by wild beets (117) whereas the fewest SNPs (95) were found in the O-type class (). In PCoA, SNP data were used within-gene (i.e., RGA) to calculate genetic distances between samples: for all 21 RGA genes but one, it was not possible to clearly discriminate between wild and cultivated beets based on SNP genotypes. Only when t […]

library_books

Draft Genome Sequence of a Pseudomonas aeruginosa Strain Able To Decompose N,N Dimethyl Formamide

2016
Genome Announc
PMCID: 4742680
PMID: 26847883
DOI: 10.1128/genomeA.01609-15

[…] esulted 15 million reads were assembled with Velvet 1.1 () and then refined with SEQuel version 1.0.2 (). The remaining contigs were submitted to the ProDeGe website () for automatic decontamination. e-RGA () was applied for genome mapping. The resulting 6,122,906-bp draft genome containing 5,336 genes is rich in G+C content (66.65%). Finally, the assembled sequence was submitted to the National C […]

library_books

Germination of photoblastic lettuce seeds is regulated via the control of endogenous physiologically active gibberellin content, rather than of gibberellin responsiveness

2008
J Exp Bot
PMCID: 2529229
PMID: 18653696
DOI: 10.1093/jxb/ern192

[…] nt up-regulates the GA responsiveness of Arabidopsis seeds through PHYTOCHROME-INTERACTING FACTOR3-LIKE5 (PIL5), a helix-loop-helix protein. In Arabidopsis seeds, the expression of two DELLA genes, i.e. RGA and GAI, is down-regulated by phytochrome (). To determine if similar phenomena occur in lettuce seeds, LsDELLA genes were examined by QRT-PCR after different light treatments (). The transcrip […]


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e-RGA institution(s)
DIMI department of Informatics and Mathematics University of Udine, Udine, Italy; IGA institute of applied genomics, Udine, Italy

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