Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 73
Release date: Nov 1 2011
Last update date: Apr 7 2014
Access: Public
Dataset link The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (RNA-Seq)

Experimental Protocol


73 samples total. Evaluation of changes in a model community's metatranscriptome over time after exposure to a consortium of 5 fermented milk product (FMP) strains (40 samples); evaluation of the gene expression of the FMP strains in other in vitro conditions, including MRS medium (B. animalis subsp. lactis only, 4 samples) and a commercial FMP fermentation (all 5 strains, 6 samples); evaluation of the gene expression of native human microbiomes before and after the consumption of a commercial FMP (23 samples).

Repositories


GEO

GSE31670

ArrayExpress

E-GEOD-31670

ENA

SRP007940

BioProject

PRJNA145383

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Contact


Nathan McNulty
Nathan Patrick McNulty