Dataset features

Specifications


Application: SNP array data analysis, aCGH data analysis
Number of samples: 156
Release date: Sep 2 2010
Last update date: Mar 22 2012
Access: Public
Diseases: Yersinia Infections, Yersinia pseudotuberculosis Infections
Dataset link Identification of new genomic areas within the genomes of Yersinia pestis and Yersinia pseudotuberculosis strains through targeted genome sequencing

Experimental Protocol


One hundred fifty six query strains were investigated in this study, with each query strain hybridized against the reference strain, CO92. Each strain has a single dye experiment. Each oligo is spotted on the Y. pestis species microarray once. Positive controls on the array consist of oligos designed from the sequenced reference genome, CO92, and negative controls on the array consist of oligos designed from the thale cress plant, Arabidopsis thaliana.The microarrays also had Agilent internal controls.

Repositories


GEO

GSE23797

ArrayExpress

E-GEOD-23797

BioProject

PRJNA130705

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Contact


John Braisted
Chunhua Wan