Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 2
Access: Public
Genes: VSX2, LHX3, MARCKS
Dataset link Chx10 consolidates V2a interneuron identity through two distinct gene repression modes [ChIP-Seq]

Experimental Protocol


ChIP DNA samples from Chx10-ESC-derived MNs were prepared for sequencing according to the Illumina protocol, and sequenced on the Illumina HiSeq 2000. The peak calling was conducted with MACS software (Zhang et al., 2008). MEME-ChIP Suite (Bailey et al., 2009; Machanick and Bailey, 2011) and TOMTOM algorithm (Gupta et al., 2007) was used for motif analysis.

Repositories


GEO

GSE83872

ArrayExpress

E-GEOD-83872

ENA

SRP077582

BioProject

PRJNA327232

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Contact


Jae Lee
Jae W Lee