Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 201
Release date: Jul 26 2016
Last update date: Aug 23 2018
Access: Public
Diseases: Alzheimer Disease
Dataset link Genetics of the hippocampal transcriptome in mouse: a systematic survey and online neurogenomics resource

Experimental Protocol


Pooled RNA samples (usually one pool of male hippocampii and one pool of female hippocampii) were prepared using standard protocols. Samples were processed using a total of 206 Affymetrix GeneChip Mouse Expression 430 2.0 short oligomer arrays (MOE430 2.0 or M430v2; see GEO platform ID GPL1261), of which 201 passed quality control and error checking. This particular data set was processed using the PDNN protocol. To simplify comparisons among transforms, PDNN values of each array were adjusted to an average of 8 units and a standard deviation of 2 units.

Repositories


GEO

GSE84767

ArrayExpress

E-GEOD-84767

BioProject

PRJNA331104

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