Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 30
Release date: Jul 15 2011
Last update date: Aug 23 2018
Access: Public
Taxon: Homo sapiens, Mus musculus
Dataset link An expression microarray approach for the identification of candidate metastable epialleles in the mouse genome

Experimental Protocol


For expression microarray studies, total RNA was isolated from liver, kidney, and brain tissue from 10 male Avy/a mice (2 per each of the 5 coat color classes) at time of weaning and coat color determination (day 22). Using Affymetrix GeneChip Mouse Genome 2.0 arrays (Santa Clara, CA), we queried the entire mouse genome for candidate metastable epialleles that display the Agouti Fingerprint. Approximately 100 of the greater than 40,000 transcripts on the mouse array displayed an expression pattern characterized as high inter-individual variation coupled with low inter-tissue variation (R-value > 1.5).

Repositories


GEO

GSE28559

ArrayExpress

E-GEOD-28559

BioProject

PRJNA139039

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Contact


Jung Kim