E3Miner statistics

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Citations per year

Number of citations per year for the bioinformatics software tool E3Miner

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E3Miner specifications


Unique identifier OMICS_05274
Name E3Miner
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No


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Publication for E3Miner

E3Miner citations


A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases

BMC Syst Biol
PMCID: 4895279
PMID: 26818115
DOI: 10.1186/s12918-015-0244-1

[…] refore, regulation of E3 ligase activities and functions may be a promising approach for cancer treatments.Many databases and tools have been developed to aid in the study of E3 ligases. For example, E3Miner [] offers a text mining approach to identify ubiquitin-protein ligases, whereas E3Net [] allows users to search through a collection of 1671 E3-substrate relationships among 493 E3s and 1277 s […]


Identification of ubiquitin/ubiquitin like protein modification from tandem mass spectra with various PTMs

BMC Bioinformatics
PMCID: 3287473
PMID: 22373085
DOI: 10.1186/1471-2105-12-S14-S8

[…] To attempt identification of ubiquitination from HUPO BPP datasets, the list of ubiquitin substrates with ubiquitinated site were collected from E3miner [] with minor tuning and Ubiprot []. Totally 38 ubiquitin substrates from human or mouse are collected with ubiqutination sites. Mass spectra matched with collected list of ubiquitin substrate […]

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E3Miner institution(s)
Department of Computer Science, KAIST, 335 Gwahangno, Yuseong-gu, Daejeon, Korea

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