Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 12
Release date: Jun 5 2013
Last update date: Jun 5 2013
Access: Public
Diseases: Deficiency Diseases, Anemia, Iron-Deficiency
Chemicals: Copper, Iron, Phosphates
Dataset link The Arabidopsis copper transport protein COPT2 and the responses under copper and iron deficiency.

Experimental Protocol


Four biological replicates of Arabidopsis seedlings were generated for 2 genotypes, Col-0 and copt2-1 mutant; and 3 growth condictions; first one an iron(Fe) and copper(Cu) sufficient medium (+Fe + Cu), second one an Fe deficient and Cu sufficient medium (-Fe+Cu) and third one an Fe and Cu deficient medium (-Fe-Cu). For each growth one comparasion was made, copt2-1 mutant versus Col-0; in each comparasion four biological replicates were made, two replicas were labeled with Cy5 for the mutant sample and Cy3 for the Col-0 sample, while the other two replicas were reversed-labeled.

Repositories


GEO

GSE42642

ArrayExpress

E-GEOD-42642

BioProject

PRJNA182502

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Contact


Francisco Vera-Sirera
Francisco Vera-Sirera