Dataset features

Specifications


Dataset type: Genome binding/occupancy profiling by high throughput sequencing, Epigenomics
Number of samples: 16
Release date: Jan 26 2018
Last update date: Nov 21 2018
Access: Public
Diseases: Atherosclerosis
Chemicals: Cholesterol
Dataset link Epigenetic regulation of macrophage cholesterol efflux and atherogenesis by a long noncoding RNA

Experimental Protocol


Peritoneal macrophages were isolated from either WT or KO animals and treated for 3 hours with or without GW using DMSO as control. Using four replicates per condition libraries were prepared using the Nextera Tn5 Transposase kit (Illumina) as described by Buenrostro and colleagues with slight modifications

Repositories


GEO

GSE97207

ENA

SRP102711

BioProject

PRJNA380956

Download