Dataset features

Specifications


Application: ChIP-seq analysis, RNA-seq analysis
Number of samples: 36
Release date: Feb 6 2017
Last update date: Nov 26 2018
Access: Public
Diseases: Neoplasms, Precursor Cell Lymphoblastic Leukemia-Lymphoma
Dataset link Molecular role of the PAX5-ETV6 oncoprotein in promoting B cell acute lymphoblastic leukemia

Experimental Protocol


36 samples in total: A) 24 RNA-Seq samples in 5 cell types: pro-B (5 genotypes, 2-4 replicates) large pre-B (2 genotypes, 2 replicates each) small pre-B (1 genotype, 2 replicates) lymph node (1 genotype, 3 replicates) bone marrow (1 genotype, 2 replicates) B) 12 ChIP-Seq samples in 2 cell types: pro-B (H3K27me3, H3K9ac, H3K4me2, H3K4me3, H3K27ac, 1 replicate each; Pax5Etv6 ChIP, Prd ChIP, 2 replicates each; Pax5 ChIP 1 replicate) lymph node (1 genotype, 2 replicates).

Repositories


GEO

GSE84987

ArrayExpress

E-GEOD-84987

ENA

SRP080323

BioProject

PRJNA335837

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