Computational protocol: Activation of Steroid and Xenobiotic Receptor (SXR, NR1I2) and Its Orthologs in Laboratory, Toxicologic, and Genome Model Species

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Protocol publication

[…] Novel sequences were checked for similarity using blastn and blastp () and submitted to GenBank (). We used ClustalX () to align deduced amino acid LBD sequences and create an identity matrix. A neighbor-joining phylogenetic tree was constructed using the PHYLIP computer program () using NR1I3 as a closely related outgroup. […]

Pipeline specifications

Software tools BLASTN, BLASTP, Clustal W, PHYLIP
Application Phylogenetics
Organisms Homo sapiens