Computational protocol: The HopQ1 Effector’s Nucleoside Hydrolase-Like Domain Is Required for Bacterial Virulence in Arabidopsis and Tomato, but Not Host Recognition in Tobacco

Similar protocols

Protocol publication

[…] A structural model for the HopQ1 protein was generated using the E. coli IU-NH RihB as a template (PDB ID = IQ8F). The MODELLER soft- ware package was used to generate a protein structural model of HopQ1 with 10 optimizations. Graphical images were produced with the UCSF Chimera package from the Resource for Biocomputing, Visualization, and Informatics at the University of California, San Francisco . […]

Pipeline specifications

Software tools MODELLER, UCSF Chimera
Application Protein structure analysis
Organisms Solanum lycopersicum, Nicotiana tabacum, Arabidopsis thaliana, Escherichia coli
Diseases Bacterial Infections
Chemicals Ribose