Tool stats & trends
Looking to identify usage trends or leading experts?
|Interface||Graphical user interface|
|Restrictions to use||Academic or non-commercial use|
|Operating system||Unix/Linux, Mac OS, Windows|
No version available
Publication for EagleView
The Staphylococcus aureus α Acetolactate Synthase ALS Confers Resistance to Nitrosative Stress
[…] lly independent samples following the previously described procedures (). RNA samples were analyzed in an Ion ProtonTM Sequencer by the PrimBio company (Primbio Research Institute, Innovation Center, Eagleview, Philadelphia, PA, United States). The transcriptome was analyzed by high-resolution RNA-Seq, and the statistical and functional data analysis was done with the Webserver Pipeline T-Rex () a […]
Chromatin accessibility: a window into the genome
[…] on of insert sizes that depicts a five to six nucleosomal array along with ten bp periodicity of insert sizes.A number of publicly available stand-alone genome browser tools , including Artemis , EagleView , MapView , Tablet , Savant , and Apollo , can be used to visualize raw tag density profiles (and enriched genomic regions, see below) in relation to available annotation tracks. T […]
Population Structure of Geosmithia morbida, the Causal Agent of Thousand Cankers Disease of Walnut Trees in the USA
[…] by using SeqMan Pro (Lasergene version 8.1.1; DNASTAR, Madison, WI, USA) yielding a total of 13,392 contigs and 21,737 singlets that were screened for the presence of microsatellite repeats by using EagleView software . Primers were designed from a subset of selected contigs based on: presence of microsatellite repeats; putative presence of polymorphism within a contig; location of repeats within […]
Semi Automatic In Silico Gap Closure Enabled De Novo Assembly of Two Dehalobacter Genomes from Metagenomic Data
[…] contigs (): a phenomenon we named “edge sequence suppression”. These traces can be revealed in the visualization of the assembly at the 5′ edge of contig00270 as shown in , which was generated using EagleView v.2.0 where the sequences that were suppressed are highlighted in red. For contig00270, there were 15 homogeneous reads suppressed, represented by the read labeled GJDNVXK01E3JVP (); these […]
Transposable Elements Are a Major Cause of Somatic Polymorphism in Vitis vinifera L.
[…] For all polymorphism calling, identification was first performed in silico and all polymorphic loci were then validated manually using EagleView . This manual validation was essential for the following reasons: i) the 454 method is known to create some false positives, particularly with homopolymer sequences ii) the parameters we use […]
Novel Tools for Conservation Genomics: Comparing Two High Throughput Approaches for SNP Discovery in the Transcriptome of the European Hake
[…] scored “no”. A flowchart for the intron-exon pipeline is depicted in .A final evaluation step of putative SNPs was performed by direct visual inspection of contigs using the assembly viewer software Eagleview and Cluster Viewer (clview; http://compbio.dfci.harvard.edu/tgi/software/), with the aim of ranking candidates within each contig by integrating information on the overall contig assembly q […]
Looking to check out a full list of citations?
Be the first to review EagleView