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EagleView specifications


Unique identifier OMICS_00882
Name EagleView
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Medium
Version 2.2
Stability Stable
Maintained Yes


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  • person_outline Weichun Huang <>

Publication for EagleView

EagleView in publications

PMCID: 5504149
PMID: 28744267
DOI: 10.3389/fmicb.2017.01273

[…] independent samples following the previously described procedures (). rna samples were analyzed in an ion protontm sequencer by the primbio company (primbio research institute, innovation center, eagleview, philadelphia, pa, united states). the transcriptome was analyzed by high-resolution rna-seq, and the statistical and functional data analysis was done with the webserver pipeline t-rex () […]

PMCID: 4231075
PMID: 25393300
DOI: 10.1371/journal.pone.0112847

[…] by using seqman pro (lasergene version 8.1.1; dnastar, madison, wi, usa) yielding a total of 13,392 contigs and 21,737 singlets that were screened for the presence of microsatellite repeats by using eagleview software . primers were designed from a subset of selected contigs based on: presence of microsatellite repeats; putative presence of polymorphism within a contig; location of repeats […]

PMCID: 3528712
PMID: 23284863
DOI: 10.1371/journal.pone.0052038

[…] contigs (): a phenomenon we named “edge sequence suppression”. these traces can be revealed in the visualization of the assembly at the 5′ edge of contig00270 as shown in , which was generated using eagleview v.2.0 where the sequences that were suppressed are highlighted in red. for contig00270, there were 15 homogeneous reads suppressed, represented by the read labeled gjdnvxk01e3jvp (); […]

PMCID: 3299709
PMID: 22427919
DOI: 10.1371/journal.pone.0032973

[…] (100 pb) or low quality (<q20) (mosaik filter) reads ()., for all polymorphism calling, identification was first performed in silico and all polymorphic loci were then validated manually using eagleview . this manual validation was essential for the following reasons: i) the 454 method is known to create some false positives, particularly with homopolymer sequences ii) the parameters […]

PMCID: 3192844
PMID: 22022265
DOI: 10.1371/journal.ppat.1002290

[…] hint of a good reliability of the prediction. additionally, the predicted number and position of snps in the contigs was manually validated in ∼100 randomly chosen contigs using the assembly viewer eagleview with a high degree of consistency (∼95%). further, the snp prediction from the contigs was mapped onto the scaffolds. by doing so, few problems were encountered. first, small contigs […]

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EagleView institution(s)
Department of Biology, Boston College, Chestnut Hill, MA, USA
EagleView funding source(s)
This research was supported by a grant to G.M. (no. R01 HG003698) from the National Human Genome Research Institute, National Institutes of Health.

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