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EAnnot specifications

Information


Unique identifier OMICS_23249
Name EAnnot
Alternative name Electronic Annotation
Software type Application/Script
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

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Publication for Electronic Annotation

EAnnot in publications

 (5)
PMCID: 3778022
PMID: 24068964
DOI: 10.1371/journal.pgen.1003799

[…] uncharacterized gene, git7, which could be involved in glcnac utilization., after identifying h. capsulatum ngt1, we also noticed a second previously uncharacterized gene (histo_er.contig17.eannot.1311.final_new) with strong sequence homology to the c. albicans ngt1 transporter by blastp analysis (e = 8.2×10−90). since this gene is predicted to encode a second ngt-like transporter in h. […]

PMCID: 3720256
PMID: 23935449
DOI: 10.1371/journal.pbio.1001614

[…] factors, the shared ryp targets included a single transcription factor with a known dna-binding domain and yeast-phase–specific expression. the corresponding gene, designated histo_dm.contig933.eannot.1650.final_new, encodes a zn(ii)2cys6 zinc binuclear cluster domain protein (). as shown by microarray and qrt-pcr experiments, transcript levels of this gene were 6.5- to 35-fold higher […]

PMCID: 3057868
PMID: 21336279
DOI: 10.1038/ng.769

[…] sequence homology searches of the rfam database (see urls). protein-coding genes were predicted using a combination of ab initio programs and fgenesh (softberry, corp) and the evidence based program eannot. a consensus gene set from the above prediction algorithms will be generated, using a logical, hierarchical approach. gene product naming was determined by ber (see urls). signal peptide […]

PMCID: 2645362
PMID: 19108728
DOI: 10.1186/1477-5956-6-36

[…] database 3 was originally assembled by washington university st. louis genome sequencing center for microarray analysis using a combination of different gene finding programs which include fgenesh, eannot, genewise, and snap [,-]. database 3 contains a total of 14,506 predicted gene sequences., ms data acquired from in-gel digests of proteins excised from the gel in figure were searched […]

PMCID: 1803023
PMID: 17327921
DOI: 10.1371/journal.pone.0000262

[…] side and a 126 bp spacer. the sequence identity between the two arms is 95.7%. similarly, c. briggsae genes cbg13233 and cbg13234 and c. remanei genes contig35.fgenesh_celegans.59.final and contig35.eannot.383.final.final, orthologs of f44e5.4 and f44e5.5, are divergently oriented with 98% and at least 88.5% dna sequence identity, respectively. (because the c. remanei genome is not finished yet, […]


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EAnnot institution(s)
Genome Sequencing Center, Washington University School of Medicine, St. Louis, MO, USA
EAnnot funding source(s)
Supported by a grant from the National Human Genome Research Institute (HG002042).

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