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EAnnot specifications

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Unique identifier OMICS_23249
Name EAnnot
Alternative name Electronic Annotation
Software type Application/Script
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

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Publication for Electronic Annotation

EAnnot citations

 (5)
library_books

A novel progesterone receptor membrane component (PGRMC) in the human and swine parasite Taenia solium: implications to the host parasite relationship

2018
PMCID: 5845172
PMID: 29523160
DOI: 10.1186/s13071-018-2703-1

[…] opened the possibility of using hardware analysis to detect the presence of different coding sequences contained in the T. solium genome. These analyses were performed with bio-computer hardware like EAnnot, SNAP and FgenesH, which in turn are based on algorithms able to find preserved regions including exon-intron junction sites, and polyadenylated sequences. Notably, transcription of both exon-i […]

library_books

N acetylglucosamine (GlcNAc) Triggers a Rapid, Temperature Responsive Morphogenetic Program in Thermally Dimorphic Fungi

2013
PLoS Genet
PMCID: 3778022
PMID: 24068964
DOI: 10.1371/journal.pgen.1003799

[…] After identifying H. capsulatum Ngt1, we also noticed a second previously uncharacterized gene (HISTO_ER.Contig17.eannot.1311.final_new) with strong sequence homology to the C. albicans Ngt1 transporter by BLASTP analysis (E = 8.2×10−90). Since this gene is predicted to encode a second Ngt-like transporter in H. […]

library_books

A Temperature Responsive Network Links Cell Shape and Virulence Traits in a Primary Fungal Pathogen

2013
PLoS Biol
PMCID: 3720256
PMID: 23935449
DOI: 10.1371/journal.pbio.1001614

[…] lence factors, the shared Ryp targets included a single transcription factor with a known DNA-binding domain and yeast-phase–specific expression. The corresponding gene, designated HISTO_DM.Contig933.eannot.1650.final_new, encodes a Zn(II)2Cys6 zinc binuclear cluster domain protein (). As shown by microarray and qRT-PCR experiments, transcript levels of this gene were 6.5- to 35-fold higher at 37° […]

library_books

The draft genome of the parasitic nematode Trichinella spiralis

2011
Nat Genet
PMCID: 3057868
PMID: 21336279
DOI: 10.1038/ng.769

[…] sequence homology searches of the Rfam database (see URLs). Protein-coding genes were predicted using a combination of ab initio programs and FgenesH (Softberry, Corp) and the evidence based program EAnnot. A consensus gene set from the above prediction algorithms will be generated, using a logical, hierarchical approach. Gene product naming was determined by BER (see URLs). Signal peptide for se […]

library_books

Histoplasma capsulatum proteome response to decreased iron availability

2008
Proteome Sci
PMCID: 2645362
PMID: 19108728
DOI: 10.1186/1477-5956-6-36

[…] nd assembled into full gene sequences with the aid of the contig assembly program (CAP)3 genome assembly program []. Database 3 was assembled using a combination of the gene finding programs Fgenesh, EAnnot, GeneWise, and SNAP [,-].MALDI-TOF MS and LC-MS/MS data were used to search in-house databases 1–3 and publicly available fungal databases using MASCOT (version 2.1, Matrix Science, London, Uni […]


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EAnnot institution(s)
Genome Sequencing Center, Washington University School of Medicine, St. Louis, MO, USA
EAnnot funding source(s)
Supported by a grant from the National Human Genome Research Institute (HG002042).

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