EAnnot statistics

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Citations per year

Number of citations per year for the bioinformatics software tool EAnnot

Tool usage distribution map

This map represents all the scientific publications referring to EAnnot per scientific context
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EAnnot specifications


Unique identifier OMICS_23249
Name EAnnot
Alternative name Electronic Annotation
Software type Application/Script
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No


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Publication for Electronic Annotation

EAnnot citations


A novel progesterone receptor membrane component (PGRMC) in the human and swine parasite Taenia solium: implications to the host parasite relationship

PMCID: 5845172
PMID: 29523160
DOI: 10.1186/s13071-018-2703-1

[…] opened the possibility of using hardware analysis to detect the presence of different coding sequences contained in the T. solium genome. These analyses were performed with bio-computer hardware like EAnnot, SNAP and FgenesH, which in turn are based on algorithms able to find preserved regions including exon-intron junction sites, and polyadenylated sequences. Notably, transcription of both exon-i […]


N acetylglucosamine (GlcNAc) Triggers a Rapid, Temperature Responsive Morphogenetic Program in Thermally Dimorphic Fungi

PLoS Genet
PMCID: 3778022
PMID: 24068964
DOI: 10.1371/journal.pgen.1003799

[…] After identifying H. capsulatum Ngt1, we also noticed a second previously uncharacterized gene (HISTO_ER.Contig17.eannot.1311.final_new) with strong sequence homology to the C. albicans Ngt1 transporter by BLASTP analysis (E = 8.2×10−90). Since this gene is predicted to encode a second Ngt-like transporter in H. […]


A Temperature Responsive Network Links Cell Shape and Virulence Traits in a Primary Fungal Pathogen

PLoS Biol
PMCID: 3720256
PMID: 23935449
DOI: 10.1371/journal.pbio.1001614

[…] lence factors, the shared Ryp targets included a single transcription factor with a known DNA-binding domain and yeast-phase–specific expression. The corresponding gene, designated HISTO_DM.Contig933.eannot.1650.final_new, encodes a Zn(II)2Cys6 zinc binuclear cluster domain protein (). As shown by microarray and qRT-PCR experiments, transcript levels of this gene were 6.5- to 35-fold higher at 37° […]


The draft genome of the parasitic nematode Trichinella spiralis

Nat Genet
PMCID: 3057868
PMID: 21336279
DOI: 10.1038/ng.769

[…] sequence homology searches of the Rfam database (see URLs). Protein-coding genes were predicted using a combination of ab initio programs and FgenesH (Softberry, Corp) and the evidence based program EAnnot. A consensus gene set from the above prediction algorithms will be generated, using a logical, hierarchical approach. Gene product naming was determined by BER (see URLs). Signal peptide for se […]


Histoplasma capsulatum proteome response to decreased iron availability

Proteome Sci
PMCID: 2645362
PMID: 19108728
DOI: 10.1186/1477-5956-6-36

[…] nd assembled into full gene sequences with the aid of the contig assembly program (CAP)3 genome assembly program []. Database 3 was assembled using a combination of the gene finding programs Fgenesh, EAnnot, GeneWise, and SNAP [,-].MALDI-TOF MS and LC-MS/MS data were used to search in-house databases 1–3 and publicly available fungal databases using MASCOT (version 2.1, Matrix Science, London, Uni […]

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EAnnot institution(s)
Genome Sequencing Center, Washington University School of Medicine, St. Louis, MO, USA
EAnnot funding source(s)
Supported by a grant from the National Human Genome Research Institute (HG002042).

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