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easyExon specifications

Information


Unique identifier OMICS_07631
Name easyExon
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Publication for easyExon

easyExon citations

 (5)
library_books

A robust estimation of exon expression to identify alternative spliced genes applied to human tissues and cancer samples

2014
BMC Genomics
PMCID: 4298068
PMID: 25297679
DOI: 10.1186/1471-2164-15-879

[…] to FIRMA that is probably the most widely used method []. There are many additional tools and bioinformatic applications that have been published to help in the analyses of exon arrays datasets, like easyExon [] Exon-Array-Analyzer [], AltAnalyze [] and BEAT []; but most of them are not very innovative approaches because they usually are integrated software packages including standard statistical […]

library_books

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments

2012
BMC Bioinformatics
PMCID: 3314565
PMID: 22536968
DOI: 10.1186/1471-2105-13-S4-S21

[…] methods focus their analysis on statistical computations, providing the users with command-line applications and requiring prior knowledge of statistical programming languages like R. AltAnalyze [], easyExon [] and Exon Array Analyzer [] are the most recent tools for exon array analysis. AltAnalyze, when installed with DomainGraph plug-in of CytoScape, is a complex software workflow for the stati […]

library_books

Alternative splicing of apoptosis related genes in imatinib treated K562 cells identified by exon array analysis

2011
PMCID: 3577368
PMID: 22211240
DOI: 10.3892/ijmm.2011.872

[…] Data from the exon arrays were processed using the easyExon software (http://microarray.ym.edu.tw/easyexon). This tool provides a user-friendly, platform-independent and efficient processing method to explore Affymetrix exon array data. Two parallel a […]

library_books

Differentially regulated splice variants and systems biology analysis of Kaposi's sarcoma associated herpesvirus infected lymphatic endothelial cells

2011
Nucleic Acids Res
PMCID: 3167639
PMID: 21646333
DOI: 10.1093/nar/gkr405

[…] reviously reported () (B, left panel).At the exome level, probe select regions (PSRs, ∼exons) were recognized as alternatively spliced exons using two free open source applications: AltAnalyze () and easyExon (). Both applications utilize the MiDAS algorithm, which calculates a splicing index (SI) first and then performs statistical inference on the SI to obtain a MiDAS P-value. To identify altern […]

library_books

μ CS: An extension of the TM4 platform to manage Affymetrix binary data

2010
BMC Bioinformatics
PMCID: 2907348
PMID: 20537149
DOI: 10.1186/1471-2105-11-315

[…] easyExon [] is an integrated pipeline for preprocessing and analysis of exon array data. easyExon can receive as input either summarized files or binary CEL files that is able to manage by calling Aff […]

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easyExon institution(s)
Institute of Microbiology and Immunology, National Yang-Ming University, and Department of Education and Research, Taipei City Hospital, Taipei, Taiwan

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