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easyExon specifications


Unique identifier OMICS_07631
Name easyExon
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes


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Publication for easyExon

easyExon citations


A robust estimation of exon expression to identify alternative spliced genes applied to human tissues and cancer samples

BMC Genomics
PMCID: 4298068
PMID: 25297679
DOI: 10.1186/1471-2164-15-879

[…] to FIRMA that is probably the most widely used method []. There are many additional tools and bioinformatic applications that have been published to help in the analyses of exon arrays datasets, like easyExon [] Exon-Array-Analyzer [], AltAnalyze [] and BEAT []; but most of them are not very innovative approaches because they usually are integrated software packages including standard statistical […]


BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments

BMC Bioinformatics
PMCID: 3314565
PMID: 22536968
DOI: 10.1186/1471-2105-13-S4-S21

[…] methods focus their analysis on statistical computations, providing the users with command-line applications and requiring prior knowledge of statistical programming languages like R. AltAnalyze [], easyExon [] and Exon Array Analyzer [] are the most recent tools for exon array analysis. AltAnalyze, when installed with DomainGraph plug-in of CytoScape, is a complex software workflow for the stati […]


Alternative splicing of apoptosis related genes in imatinib treated K562 cells identified by exon array analysis

PMCID: 3577368
PMID: 22211240
DOI: 10.3892/ijmm.2011.872

[…] Data from the exon arrays were processed using the easyExon software (http://microarray.ym.edu.tw/easyexon). This tool provides a user-friendly, platform-independent and efficient processing method to explore Affymetrix exon array data. Two parallel a […]


Differentially regulated splice variants and systems biology analysis of Kaposi's sarcoma associated herpesvirus infected lymphatic endothelial cells

Nucleic Acids Res
PMCID: 3167639
PMID: 21646333
DOI: 10.1093/nar/gkr405

[…] In order to identify alternative expressed exons, we used both AltAnalyze and easyExon () to conduct the AS analysis. Exon array raw data (CEL files) were normalized and summarized using Affymetrix Power Tools (APT) with the RMA-sketch algorithm. AltAnalyze was run using the de […]


μ CS: An extension of the TM4 platform to manage Affymetrix binary data

BMC Bioinformatics
PMCID: 2907348
PMID: 20537149
DOI: 10.1186/1471-2105-11-315

[…] In the following we compare, respectively, the use of μ-CS with respect to the use of other preprocessing tools, among those: dChip, RMAExpress, Expression Console, easyExon and Taverna workflows. To compare μ-CS with the other tools we refer to the workflow of analysis depicted in Figure . […]

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easyExon institution(s)
Institute of Microbiology and Immunology, National Yang-Ming University, and Department of Education and Research, Taipei City Hospital, Taipei, Taiwan

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