easyExon specifications


Unique identifier OMICS_07631
Name easyExon
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes


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Publication for easyExon

easyExon in publications

PMCID: 4298068
PMID: 25297679
DOI: 10.1186/1471-2164-15-879

[…] firma that is probably the most widely used method []. there are many additional tools and bioinformatic applications that have been published to help in the analyses of exon arrays datasets, like easyexon [] exon-array-analyzer [], altanalyze [] and beat []; but most of them are not very innovative approaches because they usually are integrated software packages including standard statistical […]

PMCID: 3577368
PMID: 22211240
DOI: 10.3892/ijmm.2011.872

[…] profiling of imatinib-treated k562 cells was performed by the affymetrix genechip┬« human exon 1.0 st array, and differences in exon-level expression and alternative splicing were analyzed using the easyexon software. detailed analysis by reverse transcription-pcr (rt-pcr) and sequencing of key genes confirmed the experimental results of the exon array. our results suggest that imatinib […]

PMCID: 3167639
PMID: 21646333
DOI: 10.1093/nar/gkr405

[…] p-values for klec and lec data. the complete gene expression results are presented in file s1 in supplementary data., in order to identify alternative expressed exons, we used both altanalyze and easyexon () to conduct the as analysis. exon array raw data (cel files) were normalized and summarized using affymetrix power tools (apt) with the rma-sketch algorithm. altanalyze was run using […]

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easyExon institution(s)
Institute of Microbiology and Immunology, National Yang-Ming University, and Department of Education and Research, Taipei City Hospital, Taipei, Taiwan

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