EasyqpcR statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool EasyqpcR
info

Tool usage distribution map

This map represents all the scientific publications referring to EasyqpcR per scientific context
info info

Associated diseases

This word cloud represents EasyqpcR usage per disease context
info

Popular tool citations

chevron_left Data analysis chevron_right
Want to access the full stats & trends on this tool?

Protocols

EasyqpcR specifications

Information


Unique identifier OMICS_02313
Name EasyqpcR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.21.0
Stability Stable
Requirements
plyr, knitr, plotrix, matrixStats, gWidgetsRGtk2, SLqPCR, qpcrNorm, qpcR
Maintained Yes

Versioning


No version available

Documentation


EasyqpcR citations

 (6)
call_split

The ripening disorder berry shrivel affects anthocyanin biosynthesis and sugar metabolism in Zweigelt grape berries

2017
PMCID: 5778156
PMID: 29075874
DOI: 10.1007/s00425-017-2795-4
call_split See protocol

[…] qPCR expression analyses were calculated as normalized relative quantities (NRQ) with the R package easyqPCR (Le Pape ). All statistical comparisons were conducted using IBM SPSS Statistics 21. Normal distribution of data sets was tested using the Shapiro–Wilk test. Outliers were determined accordin […]

library_books

Small secreted proteins from the necrotrophic conifer pathogen Heterobasidion annosum s.l. (HaSSPs) induce cell death in Nicotiana benthamiana

2017
Sci Rep
PMCID: 5554239
PMID: 28801666
DOI: 10.1038/s41598-017-08010-0

[…] sec, 60 °C for 10 sec, and 72 °C for 10 sec). Following cycle completion, samples were subjected to melting curve analysis to assess the primer specificity. The qPCR data were analysed in R using the EasyqpcR package and normalized using 2 reference genes (EF1a and Actin). Primer information is summarized in Supplementary Table . […]

library_books

Albugo imposed changes to tryptophan derived antimicrobial metabolite biosynthesis may contribute to suppression of non host resistance to Phytophthora infestans in Arabidopsis thaliana

2017
BMC Biol
PMCID: 5358052
PMID: 28320402
DOI: 10.1186/s12915-017-0360-z

[…] ation were calculated from three replicate reaction wells. The cycle threshold values and primer efficiencies were then used to calculate normalized relative quantities (NRQs) for each gene using the EasyqpcR package [] in R. NRQs were then log2 transformed [] and statistical analyses performed as described below. […]

library_books

Conserved Epigenetic Mechanisms Could Play a Key Role in Regulation of Photosynthesis and Development Related Genes during Needle Development of Pinus radiata

2015
PLoS One
PMCID: 4429063
PMID: 25965766
DOI: 10.1371/journal.pone.0126405

[…] level of p< 0.05 was considered significant for all statistical analyses. Five biological replicates were analysed. Quantitative PCR data was processed according to Hellemans et al. [] and R packages EasyqPCR and SLqPCR before applying ANOVA. […]

call_split

Activation of defence pathways in Scots pine bark after feeding by pine weevil (Hylobius abietis)

2015
BMC Genomics
PMCID: 4422480
PMID: 25943104
DOI: 10.1186/s12864-015-1546-9
call_split See protocol

[…] 2). Two reference genes, elongation factor 1 alfa (EF1-α, []) and alfa tubulin (TUBA []), were used to normalise the data. Finally, the Cp values were imported and analysed in R software [] using the EasyqpcR package []. […]

library_books

A survey of tools for the analysis of quantitative PCR (qPCR) data

2014
PMCID: 5129434
PMID: 27920994
DOI: 10.1016/j.bdq.2014.08.002

[…] plots. dpcR uses the shiny R packages to provide an interactive web or off-line graphical user interface application, which can be used by both R novices and experts.The recently released R package EasyqpcR is based on the qBase algorithms and calculates relative quantities using Cq values. It is able to determine amplification efficiencies using dilution series, and calculates normalization fa […]


Want to access the full list of citations?

EasyqpcR reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review EasyqpcR