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Ebbie specifications

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Unique identifier OMICS_25500
Name Ebbie
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Database management system MySQL
License GNU General Public License version 3.0
Computer skills Medium
Version 3.0.9
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Alexander Ebhardt
  • person_outline Kay Wiese
  • person_outline Peter Unrau

Publication for Ebbie

Ebbie citations

 (9)
library_books

Pilot Study of the Addition of Mass Treatment for Malaria to Existing School Based Programs to Treat Neglected Tropical Diseases

2017
PMCID: 5928736
PMID: 29141763
DOI: 10.4269/ajtmh.17-0590

[…] bridget mangoche, veronica radge, madalo mataka, fatsani gadama, charity mhango, chikondi ntonya-makuluni, phylis mzanga, faith banda, emmie gausi-chirwa, mercy susan-buluzi, chisomo khoza-taulo, ebbie gondwe, chisomo kasitomu, edwin bulla, felistas kanyandula, flora mathewe, lydia kasakula, bertha makina, prisca ngoma, bernadetta ching’anda, and doreen macheso) whose dedication, creativity, […]

library_books

Postnatal Cytomegalovirus Exposure in Infants of Antiretroviral Treated and Untreated HIV Infected Mothers

2014
PMCID: 3958696
PMID: 24723745
DOI: 10.1155/2014/989721

[…] by the center for hiv/aids vaccine immunology (u19-ai067854), the doris duke charitable foundation (srp), and the children's hospital boston fred lovejoy research award (sam). the authors thank ebbie chalaluka, dr. steve meshnick, clinical staff, and study participants at the unc malaria project in blantyre, malawi., the authors declare no conflict of interests., geeta k. swamy and sallie […]

library_books

Postnatally transmitted HIV 1 Envelope variants have similar neutralization sensitivity and function to that of nontransmitted breast milk variants

2013
Retrovirology
PMCID: 3564832
PMID: 23305422
DOI: 10.1186/1742-4690-10-3

[…] and laboratory aspects of the study, analyzed and interpreted the data, and contributed to the manuscript development. all authors read and approved the final manuscript., we are grateful to ebbie chalaluka and the study nurses, the staff at the mpemba and madziabango health centers, the blantyre district health office, alfred mali, james bunn, victor mwapasa, bonus makanani, nicole […]

library_books

Isolation of HIV 1 Neutralizing Mucosal Monoclonal Antibodies from Human Colostrum

2012
PLoS One
PMCID: 3356285
PMID: 22624058
DOI: 10.1371/journal.pone.0037648

[…] in fact, mucosal igg responses, rather than mucosal iga responses, may be a more appropriate target of maternal vaccines aimed at interrupting postnatal hiv transmission., we are grateful to ebbie chalaluka and the study nurses, the staff at the mpemba and madziabango health centers, the blantyre district health office, alfred mali, james bunn, victor mwapasa, bonus makanani, nicole […]

library_books

The Magnitude and Kinetics of the Mucosal HIV Specific CD8+ T Lymphocyte Response and Virus RNA Load in Breast Milk

2011
PLoS One
PMCID: 3160326
PMID: 21886819
DOI: 10.1371/journal.pone.0023735

[…] in postnatal-transmitting and nontransmitting mothers would assist in determining if this response is critical for protection of the breastfeeding infant from hiv acquisition., we are grateful to ebbie chalaluka and the study nurses, the staff at the mpemba and madziabango health centers, the blantyre district health office, alfred mali, victor mwapasa, bonus makanani, nicole carpenetti, […]

library_books

Naturally occurring variations in sequence length creates microRNA isoforms that differ in argonaute effector complex specificity

2010
Silence
PMCID: 2901367
PMID: 20534119
DOI: 10.1186/1758-907X-1-12

[…] sequences: hairpin, mature mirna, +1 mirna, +2 mirna and +3 mirna. all * sequences were ignored and not used for analysis. scripts are available online under gplv.2 http://www.bioinformatics.org/ebbie. the output file in fasta format was used for an in silico northern blot, which probed all computer-generated small rna sequences in various datasets (geo:gse17741 [], geo:gse5343 [] […]


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Ebbie institution(s)
Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada; School of Computing Science, Simon Fraser University Surrey, Surrey, BC, Canada
Ebbie funding source(s)
Supported by grants from Canadian Institutes of Health Research and the Michael Smith Foundation for Health Research and a postgraduate scholarship from the Natural Sciences and Engineering Council of Canada.

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