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EBI RDF platform specifications


Unique identifier OMICS_09901
Name EBI RDF platform
Restrictions to use None
Maintained Yes


  • person_outline Simon Jupp

Publication for EBI RDF platform

EBI RDF platform citations


Comparison, alignment, and synchronization of cell line information between CLO and EFO

BMC Bioinformatics
PMCID: 5763470
PMID: 29322915
DOI: 10.1186/s12859-017-1979-z

[…] e EFO can further subsume and import into EFO replacing locally identified terms. Permanent URLs (PURL) of both ontologies are also resolved on the EMBL-EBI Ontology Lookup Service (OLS) [], the EMBL-EBI RDF Platform [] and the Ontobee []. All information can be queried using SPARQL in Ontobee SPARQL endpoint (http://www.ontobee.org/sparql). […]


A semantic based workflow for biomedical literature annotation

PMCID: 5691355
PMID: 29220478
DOI: 10.1093/database/bax088

[…] ibuted queries over different SPARQL endpoints. In this way, the deployment of these semantic services with the combination of existing life science knowledge bases such as the Bio2RDF () or the EMBL-EBI RDF Platform () provides a well-structured network, in which federated inquiring mechanisms can be easily applied (, ). […]


RDFIO: extending Semantic MediaWiki for interoperable biomedical data management

J Biomed Semantics
PMCID: 5584330
PMID: 28870259
DOI: 10.1186/s13326-017-0136-y

[…] supported RDF-ization efforts of biological data are the Open PHACTS project and platform [, ], providing an integrated environment for working with data and tools related to drug discovery, and the EBI RDF [] platform, which provides data from multiple of EBI’s biological data sources in an integrated semantic data layer where connections between multiple data sources can easily be made, e.g. at […]


PubChemRDF: towards the semantic annotation of PubChem compound and substance databases

J Cheminform
PMCID: 4500850
PMID: 26175801
DOI: 10.1186/s13321-015-0084-4

[…] Other RDF-based resources exist, such as European Bioinformatics Institute (EBI) RDF [], Bio2RDF [, ], Linked Open Drug Data (LODD) [], Chem2Bio2RDF [], Open PHACTS [], ChEMBL RDF [], and others. The EBI RDF platform encompasses six public life science databases including ChEMBL, UniProt, Reactome, BioModels, BioSamples, and Expression Atlas. Bio2RDF serves as a mash-up system that integrates publ […]


Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives

Biomed Res Int
PMCID: 4165507
PMID: 25254202
DOI: 10.1155/2014/134023

[…] e of linked data in the computational biology field has been done by the abovementioned EBI [], which developed an infrastructure to access its information by exploiting this paradigm. In detail, the EBI RDF platform allows explicit links to be made between datasets using shared semantics from standard ontologies and vocabularies, facilitating a greater degree of data integration. SPARQL provides […]


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EBI RDF platform institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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