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EBImage

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Provides general purpose functionality for reading, writing, processing and analysis of images. In the context of microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and use of existing tools in the R environment for signal processing, statistical modeling, machine learning and data visualization. It uses ImageMagick to read and save images, and supports more than 80 image formats, including JPEG, TIFF, TGA, GIF and PNG. EBImage also supports standard geometric transformations such as rotation, reflection, cropping, translation and resizing. Classical image processing tools are available: linear filtering, morphological erosion and dilation, fast distance map computation, contour delineation and area filling.

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EBImage forum

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EBImage classification

EBImage specifications

Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU Lesser General Public License version 3.0
Version:
4.10.1
Maintained:
Yes

EBImage distribution

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No versioning.

EBImage support

Documentation

Maintainer

  • Andrzej Oleś <>

Credits

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Publications

Institution(s)

EMBL—European Bioinformatics Institute, Cambridge, UK

Funding source(s)

CancerPathways project (EU FP7, grant HEALTH-F2-2008-201666); Research Grant, Human Frontier Sciences Program

Link to literature

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