EBIMed statistics

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Citations per year

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Popular tool citations

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Associated diseases

Associated diseases

EBIMed specifications


Unique identifier OMICS_01180
Name EBIMed
Interface Web user interface
Restrictions to use None
Output data The results are shown in a table that displays all the associations and links to the sentences that support them and to the original abstracts.
Computer skills Basic
Stability Stable
Maintained No


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Publication for EBIMed

EBIMed in publications

PMCID: 5502361
DOI: 10.1093/database/bax040

[…] triage, the search engines we explore in this report will also be more specialized and address more specific curation needs. although they may not perform better than existing ones (e.g. pubmed, ebimed, eagliā€¦) as general-purpose search tools, we expect they will be optimal to rank the literature given a particular annotation task. in previous works, we presented successful examples […]

PMCID: 4212285
PMID: 25379146
DOI: 10.1016/j.csbj.2014.08.004

[…] concisely collect up-to-date information on a given protein. however, it does not allow querying specific concepts and biological contexts. this is supported by specific text-mining tools such as ebimed , sciminer , and polysearch . ebimed and sciminer accept free literature queries as the input and automatically identify and associate the proteins, functions, and drugs reported […]

PMCID: 3639894
PMID: 23646153
DOI: 10.1371/journal.pone.0062874

[…] with information retrieval engines. the past years have seen the development of a wealth of search engines and text mining instruments to navigate the biomedical literature (e.g. gopubmed, ebimed, etc.). however, these information retrieval systems often generate high volumes of information at the expense of specificity and sensitivity to the query at hand: they provide the users […]

PMCID: 3632996
PMID: 23734562
DOI: 10.1186/2041-1480-4-S1-S3

[…] from existing taxonomies or ontologies - either by using existing manual annotations or by automatically assigning relevant terms. systems based on this principle include gopubmed [] as well as ebimed [] and its sister application whatizit []. all these systems are mainly or exclusively intended for use with medline/pubmed documents; there is no comparable system for patents. consequently, […]

PMCID: 3514750
PMID: 23221176
DOI: 10.1093/database/bas050

[…] 1., it is worth observing that step 1 is directly dependent on the user interface of the curation platform. various user interaction models can be designed here: interactive search (e.g. pubmed, ebimed, eagli, etc.) or batch search, where the curator receives regular (daily, weekly, etc.) alerts and notifications. in the alerting model, queries must have been previously registered […]

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EBIMed institution(s)
European Bioinformatics Institute (EBI), Wellcome Trust Genome CampusHinxton, Cambridge, UK

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